clustalw-2.1/src/Makefile.in

156 CYGPATH_W = @CYGPATH_W@
531 @am__fastdepCXX_TRUE@	$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
535 @am__fastdepCXX_FALSE@	$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
545 …f './pairwise/FullPairwiseAlign.cpp'; then $(CYGPATH_W) './pairwise/FullPairwiseAlign.cpp'; else $…
549 …f './pairwise/FullPairwiseAlign.cpp'; then $(CYGPATH_W) './pairwise/FullPairwiseAlign.cpp'; else $…
559 …f './pairwise/FastPairwiseAlign.cpp'; then $(CYGPATH_W) './pairwise/FastPairwiseAlign.cpp'; else $…
563 …f './pairwise/FastPairwiseAlign.cpp'; then $(CYGPATH_W) './pairwise/FastPairwiseAlign.cpp'; else $…
573 …st -f './fileInput/MSFFileParser.cpp'; then $(CYGPATH_W) './fileInput/MSFFileParser.cpp'; else $(C…
577 …st -f './fileInput/MSFFileParser.cpp'; then $(CYGPATH_W) './fileInput/MSFFileParser.cpp'; else $(C…
587 …if test -f './fileInput/FileReader.cpp'; then $(CYGPATH_W) './fileInput/FileReader.cpp'; else $(CY…
591 …if test -f './fileInput/FileReader.cpp'; then $(CYGPATH_W) './fileInput/FileReader.cpp'; else $(CY…
601 …st -f './fileInput/PIRFileParser.cpp'; then $(CYGPATH_W) './fileInput/PIRFileParser.cpp'; else $(C…
605 …st -f './fileInput/PIRFileParser.cpp'; then $(CYGPATH_W) './fileInput/PIRFileParser.cpp'; else $(C…
615 …st -f './fileInput/RSFFileParser.cpp'; then $(CYGPATH_W) './fileInput/RSFFileParser.cpp'; else $(C…
619 …st -f './fileInput/RSFFileParser.cpp'; then $(CYGPATH_W) './fileInput/RSFFileParser.cpp'; else $(C…
629 …st -f './fileInput/GDEFileParser.cpp'; then $(CYGPATH_W) './fileInput/GDEFileParser.cpp'; else $(C…
633 …st -f './fileInput/GDEFileParser.cpp'; then $(CYGPATH_W) './fileInput/GDEFileParser.cpp'; else $(C…
643 …test -f './fileInput/InFileStream.cpp'; then $(CYGPATH_W) './fileInput/InFileStream.cpp'; else $(C…
647 …test -f './fileInput/InFileStream.cpp'; then $(CYGPATH_W) './fileInput/InFileStream.cpp'; else $(C…
657 …'./fileInput/ClustalFileParser.cpp'; then $(CYGPATH_W) './fileInput/ClustalFileParser.cpp'; else $…
661 …'./fileInput/ClustalFileParser.cpp'; then $(CYGPATH_W) './fileInput/ClustalFileParser.cpp'; else $…
671 …'./fileInput/PearsonFileParser.cpp'; then $(CYGPATH_W) './fileInput/PearsonFileParser.cpp'; else $…
675 …'./fileInput/PearsonFileParser.cpp'; then $(CYGPATH_W) './fileInput/PearsonFileParser.cpp'; else $…
685 …if test -f './fileInput/FileParser.cpp'; then $(CYGPATH_W) './fileInput/FileParser.cpp'; else $(CY…
689 …if test -f './fileInput/FileParser.cpp'; then $(CYGPATH_W) './fileInput/FileParser.cpp'; else $(CY…
699 …t -f './fileInput/EMBLFileParser.cpp'; then $(CYGPATH_W) './fileInput/EMBLFileParser.cpp'; else $(…
703 …t -f './fileInput/EMBLFileParser.cpp'; then $(CYGPATH_W) './fileInput/EMBLFileParser.cpp'; else $(…
713 …./tree/UPGMA/RootedClusterTree.cpp'; then $(CYGPATH_W) './tree/UPGMA/RootedClusterTree.cpp'; else …
717 …./tree/UPGMA/RootedClusterTree.cpp'; then $(CYGPATH_W) './tree/UPGMA/RootedClusterTree.cpp'; else …
727 …-f './tree/UPGMA/UPGMAAlgorithm.cpp'; then $(CYGPATH_W) './tree/UPGMA/UPGMAAlgorithm.cpp'; else $(…
731 …-f './tree/UPGMA/UPGMAAlgorithm.cpp'; then $(CYGPATH_W) './tree/UPGMA/UPGMAAlgorithm.cpp'; else $(…
741 …e.obj `if test -f './tree/UPGMA/Node.cpp'; then $(CYGPATH_W) './tree/UPGMA/Node.cpp'; else $(CYGPA…
745 …e.obj `if test -f './tree/UPGMA/Node.cpp'; then $(CYGPATH_W) './tree/UPGMA/Node.cpp'; else $(CYGPA…
755 …f './tree/UPGMA/RootedGuideTree.cpp'; then $(CYGPATH_W) './tree/UPGMA/RootedGuideTree.cpp'; else $…
759 …f './tree/UPGMA/RootedGuideTree.cpp'; then $(CYGPATH_W) './tree/UPGMA/RootedGuideTree.cpp'; else $…
769 …'./tree/UPGMA/RootedTreeOutput.cpp'; then $(CYGPATH_W) './tree/UPGMA/RootedTreeOutput.cpp'; else $…
773 …'./tree/UPGMA/RootedTreeOutput.cpp'; then $(CYGPATH_W) './tree/UPGMA/RootedTreeOutput.cpp'; else $…
783 …-c -o Tree.obj `if test -f './tree/Tree.cpp'; then $(CYGPATH_W) './tree/Tree.cpp'; else $(CYGPATH_…
787 …-c -o Tree.obj `if test -f './tree/Tree.cpp'; then $(CYGPATH_W) './tree/Tree.cpp'; else $(CYGPATH_…
797 ….obj `if test -f './tree/ClusterTree.cpp'; then $(CYGPATH_W) './tree/ClusterTree.cpp'; else $(CYGP…
801 ….obj `if test -f './tree/ClusterTree.cpp'; then $(CYGPATH_W) './tree/ClusterTree.cpp'; else $(CYGP…
811 …j `if test -f './tree/TreeInterface.cpp'; then $(CYGPATH_W) './tree/TreeInterface.cpp'; else $(CYG…
815 …j `if test -f './tree/TreeInterface.cpp'; then $(CYGPATH_W) './tree/TreeInterface.cpp'; else $(CYG…
825 …t -f './tree/UnRootedClusterTree.cpp'; then $(CYGPATH_W) './tree/UnRootedClusterTree.cpp'; else $(…
829 …t -f './tree/UnRootedClusterTree.cpp'; then $(CYGPATH_W) './tree/UnRootedClusterTree.cpp'; else $(…
839 …test -f './tree/ClusterTreeOutput.cpp'; then $(CYGPATH_W) './tree/ClusterTreeOutput.cpp'; else $(C…
843 …test -f './tree/ClusterTreeOutput.cpp'; then $(CYGPATH_W) './tree/ClusterTreeOutput.cpp'; else $(C…
853 …if test -f './tree/RandomGenerator.cpp'; then $(CYGPATH_W) './tree/RandomGenerator.cpp'; else $(CY…
857 …if test -f './tree/RandomGenerator.cpp'; then $(CYGPATH_W) './tree/RandomGenerator.cpp'; else $(CY…
867 … NJTree.obj `if test -f './tree/NJTree.cpp'; then $(CYGPATH_W) './tree/NJTree.cpp'; else $(CYGPATH…
871 … NJTree.obj `if test -f './tree/NJTree.cpp'; then $(CYGPATH_W) './tree/NJTree.cpp'; else $(CYGPATH…
881 …`if test -f './tree/AlignmentSteps.cpp'; then $(CYGPATH_W) './tree/AlignmentSteps.cpp'; else $(CYG…
885 …`if test -f './tree/AlignmentSteps.cpp'; then $(CYGPATH_W) './tree/AlignmentSteps.cpp'; else $(CYG…
895 …-f './interface/InteractiveMenu.cpp'; then $(CYGPATH_W) './interface/InteractiveMenu.cpp'; else $(…
899 …-f './interface/InteractiveMenu.cpp'; then $(CYGPATH_W) './interface/InteractiveMenu.cpp'; else $(…
909 …'./interface/CommandLineParser.cpp'; then $(CYGPATH_W) './interface/CommandLineParser.cpp'; else $…
913 …'./interface/CommandLineParser.cpp'; then $(CYGPATH_W) './interface/CommandLineParser.cpp'; else $…
923 …./substitutionMatrix/SubMatrix.cpp'; then $(CYGPATH_W) './substitutionMatrix/SubMatrix.cpp'; else …
927 …./substitutionMatrix/SubMatrix.cpp'; then $(CYGPATH_W) './substitutionMatrix/SubMatrix.cpp'; else …
937 …st -f './multipleAlign/Iteration.cpp'; then $(CYGPATH_W) './multipleAlign/Iteration.cpp'; else $(C…
941 …st -f './multipleAlign/Iteration.cpp'; then $(CYGPATH_W) './multipleAlign/Iteration.cpp'; else $(C…
951 …bj `if test -f './multipleAlign/MSA.cpp'; then $(CYGPATH_W) './multipleAlign/MSA.cpp'; else $(CYGP…
955 …bj `if test -f './multipleAlign/MSA.cpp'; then $(CYGPATH_W) './multipleAlign/MSA.cpp'; else $(CYGP…
965 …n/MyersMillerProfileAlign.cpp'; then $(CYGPATH_W) './multipleAlign/MyersMillerProfileAlign.cpp'; e…
969 …n/MyersMillerProfileAlign.cpp'; then $(CYGPATH_W) './multipleAlign/MyersMillerProfileAlign.cpp'; e…
979 …multipleAlign/ProfileStandard.cpp'; then $(CYGPATH_W) './multipleAlign/ProfileStandard.cpp'; else …
983 …multipleAlign/ProfileStandard.cpp'; then $(CYGPATH_W) './multipleAlign/ProfileStandard.cpp'; else …
993 …./multipleAlign/ProfileWithSub.cpp'; then $(CYGPATH_W) './multipleAlign/ProfileWithSub.cpp'; else …
997 …./multipleAlign/ProfileWithSub.cpp'; then $(CYGPATH_W) './multipleAlign/ProfileWithSub.cpp'; else …
1007 …-f './multipleAlign/ProfileBase.cpp'; then $(CYGPATH_W) './multipleAlign/ProfileBase.cpp'; else $(…
1011 …-f './multipleAlign/ProfileBase.cpp'; then $(CYGPATH_W) './multipleAlign/ProfileBase.cpp'; else $(…
1021 …ipleAlign/LowScoreSegProfile.cpp'; then $(CYGPATH_W) './multipleAlign/LowScoreSegProfile.cpp'; els…
1025 …ipleAlign/LowScoreSegProfile.cpp'; then $(CYGPATH_W) './multipleAlign/LowScoreSegProfile.cpp'; els…
1035 …j `if test -f './general/OutputFile.cpp'; then $(CYGPATH_W) './general/OutputFile.cpp'; else $(CYG…
1039 …j `if test -f './general/OutputFile.cpp'; then $(CYGPATH_W) './general/OutputFile.cpp'; else $(CYG…
1049 …test -f './general/UserParameters.cpp'; then $(CYGPATH_W) './general/UserParameters.cpp'; else $(C…
1053 …test -f './general/UserParameters.cpp'; then $(CYGPATH_W) './general/UserParameters.cpp'; else $(C…
1063 …y.obj `if test -f './general/Utility.cpp'; then $(CYGPATH_W) './general/Utility.cpp'; else $(CYGPA…
1067 …y.obj `if test -f './general/Utility.cpp'; then $(CYGPATH_W) './general/Utility.cpp'; else $(CYGPA…
1077 …f './general/InvalidCombination.cpp'; then $(CYGPATH_W) './general/InvalidCombination.cpp'; else $…
1081 …f './general/InvalidCombination.cpp'; then $(CYGPATH_W) './general/InvalidCombination.cpp'; else $…
1091 ….obj `if test -f './general/DebugLog.cpp'; then $(CYGPATH_W) './general/DebugLog.cpp'; else $(CYGP…
1095 ….obj `if test -f './general/DebugLog.cpp'; then $(CYGPATH_W) './general/DebugLog.cpp'; else $(CYGP…
1105 …-f './general/ClustalWResources.cpp'; then $(CYGPATH_W) './general/ClustalWResources.cpp'; else $(…
1109 …-f './general/ClustalWResources.cpp'; then $(CYGPATH_W) './general/ClustalWResources.cpp'; else $(…
1119 …t -f './general/VectorOutOfRange.cpp'; then $(CYGPATH_W) './general/VectorOutOfRange.cpp'; else $(…
1123 …t -f './general/VectorOutOfRange.cpp'; then $(CYGPATH_W) './general/VectorOutOfRange.cpp'; else $(…
1133 …bj `if test -f './general/SymMatrix.cpp'; then $(CYGPATH_W) './general/SymMatrix.cpp'; else $(CYGP…
1137 …bj `if test -f './general/SymMatrix.cpp'; then $(CYGPATH_W) './general/SymMatrix.cpp'; else $(CYGP…
1147 …tats.obj `if test -f './general/Stats.cpp'; then $(CYGPATH_W) './general/Stats.cpp'; else $(CYGPAT…
1151 …tats.obj `if test -f './general/Stats.cpp'; then $(CYGPATH_W) './general/Stats.cpp'; else $(CYGPAT…
1161 …elp.Tpo -c -o Help.obj `if test -f './Help.cpp'; then $(CYGPATH_W) './Help.cpp'; else $(CYGPATH_W)…
1165 …XFLAGS) -c -o Help.obj `if test -f './Help.cpp'; then $(CYGPATH_W) './Help.cpp'; else $(CYGPATH_W)…
1175 …`if test -f './alignment/Alignment.cpp'; then $(CYGPATH_W) './alignment/Alignment.cpp'; else $(CYG…
1179 …`if test -f './alignment/Alignment.cpp'; then $(CYGPATH_W) './alignment/Alignment.cpp'; else $(CYG…
1189 …-f './alignment/AlignmentOutput.cpp'; then $(CYGPATH_W) './alignment/AlignmentOutput.cpp'; else $(…
1193 …-f './alignment/AlignmentOutput.cpp'; then $(CYGPATH_W) './alignment/AlignmentOutput.cpp'; else $(…
1203 …t -f './alignment/ObjectiveScore.cpp'; then $(CYGPATH_W) './alignment/ObjectiveScore.cpp'; else $(…
1207 …t -f './alignment/ObjectiveScore.cpp'; then $(CYGPATH_W) './alignment/ObjectiveScore.cpp'; else $(…
1217 …j `if test -f './alignment/Sequence.cpp'; then $(CYGPATH_W) './alignment/Sequence.cpp'; else $(CYG…
1221 …j `if test -f './alignment/Sequence.cpp'; then $(CYGPATH_W) './alignment/Sequence.cpp'; else $(CYG…
1231 …-c -o Clustal.obj `if test -f './Clustal.cpp'; then $(CYGPATH_W) './Clustal.cpp'; else $(CYGPATH_W…
1235 …-c -o Clustal.obj `if test -f './Clustal.cpp'; then $(CYGPATH_W) './Clustal.cpp'; else $(CYGPATH_W…
1245 …ain.Tpo -c -o main.obj `if test -f './main.cpp'; then $(CYGPATH_W) './main.cpp'; else $(CYGPATH_W)…
1249 …XFLAGS) -c -o main.obj `if test -f './main.cpp'; then $(CYGPATH_W) './main.cpp'; else $(CYGPATH_W)…