Lines Matching refs:score_

76 		score_.resize(band);  in Matrix()
78 std::fill(score_.begin(), score_.end(), _sv()); in Matrix()
83 return ColumnIterator(&hgap_[offset], &score_[offset]); in begin()
89 return score_[i];
92 MemBuffer<_sv> hgap_, score_; member
94 static thread_local MemBuffer<_sv> hgap_, score_; member
156 score_(score), in TracebackIterator()
164 return *score_; in score()
168 return *(score_ - band_ * CHANNELS); in diag()
172 score_ -= band_ * ::DISPATCH_ARCH::ScoreTraits<_sv>::CHANNELS; in walk_diagonal()
180 …const Score *h = score_ - (band_ - 1) * CHANNELS, *h0 = score_ - (j - j0) * (band_ - 1) * CHANNELS; in walk_gap()
181 const Score *v = score_ - CHANNELS, *v0 = score_ - (i - i0 + 1) * CHANNELS; in walk_gap()
221 score_ = h; in walk_hgap()
227 score_ = v; in walk_vgap()
232 const Score *score_; member
240 const Score *s = (Score*)(&score_[col*band_ + i_]) + channel; in traceback()
251 score_.resize(band * (cols + 1)); in TracebackMatrix()
253 std::fill(score_.begin(), score_.begin() + band, _sv()); in TracebackMatrix()
258 …return ColumnIterator(&hgap_[offset], &score_[col*band_ + offset], &score_[(col + 1)*band_ + offse… in begin()
265 MemBuffer<_sv> hgap_, score_; member
378 score_.resize(band); in TracebackVectorMatrix()
381 std::fill(score_.begin(), score_.end(), _sv()); in TracebackVectorMatrix()
386 …return ColumnIterator(&hgap_[offset], &score_[offset], &trace_mask_[size_t(col + 1)*(size_t)band_ … in begin()
398 MemBuffer<_sv> hgap_, score_; member
400 static thread_local MemBuffer<_sv> hgap_, score_; member
409 template<typename _sv> thread_local MemBuffer<_sv> Matrix<_sv>::score_;
411 template<typename _sv> thread_local MemBuffer<_sv> TracebackVectorMatrix<_sv>::score_;