Lines Matching refs:initsw

577 the old initsw.c are now in initfa.c; initsw.c will be removed.
604 initfa.c.  initfa.c now provides initsw.c functionality, so that
605 initsw.c is no longer needed.
817 Changes to dropfs2.c, initsw.c, initfa.c to provide -m9c information
978 Changes to compacc.c, getseq.c, doinit.c initfa.c, initsw.c, and
1004 initfa.c/initsw.c files.
1048 initfa.c/initsw.c files.
1070 sortbest() has been moved into initfa.c/initsw.c to make it function specific.
1189 present.  Changes to initfa.c, initsw.c to ensure that a match to a
1195 Fixes to doinit.c, initfa.c, initsw.c to allow DNA matrices using the
1403 Changes to doinit.c/initfa.c/initsw.c to provide a new function -
1654 (initfa.c, initsw.c) not being set properly.  A subtle problem with
1668 Minor fixes to initfa.c, initsw.c to deal with DNA scoring matrices