204 def handle_duplicates(suffix, calculate, threads, db_basename, force_mode):  argument
220   if force_mode:
254 def handle_unsorted(suffix, db_basename, force_mode):  argument
258     if force_mode:
265 def handle_missing(suffix, calculate, db_basename, threads, force_mode):  argument
277   if force_mode:
302 def handle_overhead(suffix, db_basename, force_mode):  argument
315   if force_mode:
330 def check_a3m_format(db_basename, force_mode):  argument
347   if force_mode:
366 def check_database(output_basename, threads, force_mode):  argument
378   check_a3m_format(output_basename, force_mode)
382   handle_unsorted("a3m", output_basename, force_mode)
383   handle_unsorted("hhm", output_basename, force_mode)
384   handle_unsorted("cs219", output_basename, force_mode)
386   handle_duplicates("a3m", calculate_hhm, threads, output_basename, force_mode)
387   handle_duplicates("hhm", calculate_hhm, threads, output_basename, force_mode)
388   handle_duplicates("cs219", calculate_cs219, threads, output_basename, force_mode)
390   handle_missing("cs219", calculate_cs219, output_basename, threads, force_mode)
392   handle_overhead("hhm", output_basename, force_mode)
393   handle_overhead("cs219", output_basename, force_mode)
478   check_database(options.output_basename, options.nr_cores, options.force_mode)