Lines Matching refs:res

1 res/ChartAddIns/Approximate_CDF
2 res/ChartAddIns/Column Operations
3 res/ChartAddIns/Complex Select Cells By Value
4 res/ChartAddIns/Contigency Table
5 res/ChartAddIns/Covariance
6 res/ChartAddIns/DBAddIns/DescriptiveStats.bf
7 res/ChartAddIns/DBAddIns/FromSQLFlatFile.bf
8 res/ChartAddIns/DBAddIns/HY_DBW_TemplateList
9 res/ChartAddIns/DBAddIns/ToChartWindow.bf
10 res/ChartAddIns/DBAddIns/ToConsole.bf
11 res/ChartAddIns/DBAddIns/ToFastaFile.bf
12 res/ChartAddIns/DBAddIns/ToFastaFileFromPandit.bf
13 res/ChartAddIns/DBAddIns/ToFrontierFastaFile.bf
14 res/ChartAddIns/DBAddIns/ToSQLFlatFile.bf
15 res/ChartAddIns/DBAddIns/ToTabFile.bf
16 res/ChartAddIns/Descriptive Statistics
17 res/ChartAddIns/Distribution Moments
18 res/ChartAddIns/DistributionAddIns/Event Posteriors
19 res/ChartAddIns/DistributionAddIns/Includes/posteriors.ibf
20 res/ChartAddIns/DistributionAddIns/Most Likely Class Assignment
21 res/ChartAddIns/DistributionAddIns/Posterior Distribution
22 res/ChartAddIns/DistributionAddIns/Posterior Moments
23 res/ChartAddIns/DistributionAddIns/Prior Moments
24 res/ChartAddIns/Gaussian Penalty Clustering
25 res/ChartAddIns/Goodness of Fit
26 res/ChartAddIns/Histogram
27 res/ChartAddIns/K-Mean Clustering
28 res/ChartAddIns/KH Resampler
29 res/ChartAddIns/Linear Fit
30 res/ChartAddIns/Mean Profile Plot
31 res/ChartAddIns/Median Profile Plot
32 res/ChartAddIns/Poisson Mixture Fit
33 res/ChartAddIns/Populate Cells
34 res/ChartAddIns/Profile Mean Clustering
35 res/ChartAddIns/Running Sum
36 res/ChartAddIns/Samplers/lhc.bf
37 res/ChartAddIns/Samplers/sir.bf
38 res/ChartAddIns/Samplers/srs.ibf
39 res/ChartAddIns/Select Cells By Index
40 res/ChartAddIns/Select Cells By Value
41 res/ChartAddIns/SingleColumn
42 res/ChartAddIns/Sort
43 res/data/.DS_Store
44 res/data/brown.nuc
45 res/data/integrase_BDA.nex
46 res/data/p51.aa
47 res/data/p51.nex
48 res/DatapanelAddIns/Character Plot
49 res/DatapanelAddIns/Character Plot Two
50 res/DatapanelAddIns/Compare Subsets
51 res/DatapanelAddIns/ibfs/char_colors.def
52 res/DatapanelAddIns/Sequence Plot
53 res/DatapanelAddIns/TBD/Character Plot By Sequence
54 res/GeneticCodes/Alt_Yeast_Nuclear.cod
55 res/GeneticCodes/Ascidian_mtDNA.cod
56 res/GeneticCodes/Blepharisma_Nuclear.cod
57 res/GeneticCodes/Ciliate.cod
58 res/GeneticCodes/Echinoderm_mtDNA.cod
59 res/GeneticCodes/Euplotid_Nuclear.cod
60 res/GeneticCodes/Flatworm_mtDNA.cod
61 res/GeneticCodes/Invertebrate_mtDNA.cod
62 res/GeneticCodes/Mold_mtDNA.cod
63 res/GeneticCodes/Thraustochytrium_mtDNA.cod
64 res/GeneticCodes/Vertebratemtdna.cod
65 res/GeneticCodes/Yeast_mtDNA.cod
66 res/SubstitutionClasses/aa.bf
67 res/SubstitutionClasses/AAEFV/Equal
68 res/SubstitutionClasses/AAEFV/Estimated
69 res/SubstitutionClasses/AAEFV/Observed In Data Set
70 res/SubstitutionClasses/AAEFV/Observed In Partition
71 res/SubstitutionClasses/codon.bf
72 res/SubstitutionClasses/CodonEFV/Equal
73 res/SubstitutionClasses/CodonEFV/Observed Codon
74 res/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
75 res/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
76 res/SubstitutionClasses/dinuc.bf
77 res/SubstitutionClasses/Heterogeneity/2 Bin Discrete
78 res/SubstitutionClasses/Heterogeneity/Beta
79 res/SubstitutionClasses/Heterogeneity/Beta-Gamma
80 res/SubstitutionClasses/Heterogeneity/General Discrete
81 res/SubstitutionClasses/Heterogeneity/Half Normal
82 res/SubstitutionClasses/Heterogeneity/Lognormal
83 res/SubstitutionClasses/nuc.bf
84 res/SubstitutionClasses/NucEFV/Equal
85 res/SubstitutionClasses/NucEFV/Estimated
86 res/SubstitutionClasses/NucEFV/Observed In Data Set
87 res/SubstitutionClasses/NucEFV/Observed In Partition
88 res/SubstitutionModels/Aminoacid/Dayhoff.mdl
89 res/SubstitutionModels/Aminoacid/EIAA.mdl
90 res/SubstitutionModels/Aminoacid/Fitness.mdl
91 res/SubstitutionModels/Aminoacid/Jones.mdl
92 res/SubstitutionModels/Aminoacid/mtREV.mdl
93 res/SubstitutionModels/Binary/F81.mdl
94 res/SubstitutionModels/Codon/GY94_3x4.mdl
95 res/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
96 res/SubstitutionModels/Codon/MG94.mdl
97 res/SubstitutionModels/Codon/MG94_3x4.mdl
98 res/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
99 res/SubstitutionModels/Codon/MG94_REV_3x4.mdl
100 res/SubstitutionModels/Codon/MG94_REV_3x4.mdl copy
101 res/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl
102 res/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
103 res/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
104 res/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl
105 res/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
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108 res/SubstitutionModels/Nucleotide/HKY85.mdl
109 res/SubstitutionModels/Nucleotide/REV.mdl
110 res/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
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121 res/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl
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158 res/TemplateBatchFiles/CodonBivariateRateProcessor.bf
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160 res/TemplateBatchFiles/CodonToProtein.bf
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166 res/TemplateBatchFiles/DirectionalREL.bf
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169 res/TemplateBatchFiles/DistanceMatrix_Splits.bf
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172 res/TemplateBatchFiles/Distances/CodonTools.def
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175 res/TemplateBatchFiles/Distances/JC69
176 res/TemplateBatchFiles/Distances/K2P
177 res/TemplateBatchFiles/Distances/K2P_RV
178 res/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
179 res/TemplateBatchFiles/Distances/Nei_Gojobori
180 res/TemplateBatchFiles/Distances/p_Distance
181 res/TemplateBatchFiles/Distances/p_Distance_aa
182 res/TemplateBatchFiles/Distances/p_Distance_binary
183 res/TemplateBatchFiles/Distances/p_Distance_codon
184 res/TemplateBatchFiles/Distances/PC
185 res/TemplateBatchFiles/Distances/PC_MH
186 res/TemplateBatchFiles/Distances/PC_RV
187 res/TemplateBatchFiles/Distances/T3P
188 res/TemplateBatchFiles/Distances/TN84
189 res/TemplateBatchFiles/Distances/TN93
190 res/TemplateBatchFiles/Distances/TN93_RV
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485 res/TopologyInference/Star_Decomposition
486 res/TopologyInference/Support/branchSwappingFunctions.bf
487 res/TopologyInference/Support/doNNISwap.bf
488 res/TopologyInference/Support/doSPRSwap.bf
489 res/TreeAddIns/Splits
490 res/TreeAddIns/Tree Statistics
491 res/UserAddins/AAContent
492 res/UserAddins/BatchFileByURL
493 res/UserAddins/BranchLengthCI
494 res/UserAddins/CodonMutationToTreeMapper
495 res/UserAddins/CountSubstitutions
496 res/UserAddins/ExportLikelihoodFunction
497 res/UserAddins/GenBankSequences
498 res/UserAddins/Includes/ChooseALF.ibf
499 res/UserAddins/Includes/MappersHelp.ibf
500 res/UserAddins/Includes/MappersHelpAA.ibf
501 res/UserAddins/ListUserFunctions
502 res/UserAddins/LRT
503 res/UserAddins/MapSubstitutions
504 res/UserAddins/MeanPairwiseDivergence
505 res/UserAddins/MeanPairwiseDivergenceSubset
506 res/UserAddins/ModelCounter
507 res/UserAddins/OldAddins/AAMutationCounter
508 res/UserAddins/OldAddins/CodonMutationToTreeMapper.bf
509 res/UserAddins/OldAddins/ColorPSTree
510 res/UserAddins/OldAddins/ConvergentAndParallel
511 res/UserAddins/OldAddins/CopyBranchLengths
512 res/UserAddins/OldAddins/DashPSTree
513 res/UserAddins/OldAddins/dNanddSTrees.bf
514 res/UserAddins/OldAddins/dS and dN factors
515 res/UserAddins/OldAddins/ExpsPerDirection
516 res/UserAddins/OldAddins/FilterAssignments
517 res/UserAddins/OldAddins/InferredAASubstitutionsCounter
518 res/UserAddins/OldAddins/LocaldNdS
519 res/UserAddins/OldAddins/ModelFitSummary
520 res/UserAddins/OldAddins/ModelFitSummaryAA
521 res/UserAddins/OldAddins/Multiclass DN DS inference
522 res/UserAddins/OldAddins/PartitionBranchesByClasses
523 res/UserAddins/OldAddins/PredictivePosteriorP
524 res/UserAddins/OldAddins/RNARateMatrix
525 res/UserAddins/OldAddins/SimulateAndTabDN_DS
526 res/UserAddins/OldAddins/SimulateFromLF
527 res/UserAddins/OldAddins/TreeLengthConstraint
528 res/UserAddins/RecombinationProcessor.bf
529 res/UserAddins/SimulateFromLF
530 res/UserAddins/Tidbits