150     regn_t *regn;  in parse_regn()  local
180         if( NULL == (regn = (regn_t *)malloc(sizeof(regn_t)))) {  in parse_regn()
185 	regn->coord = (NULL == coord ? 'B' : *coord );  in parse_regn()
187 	regn->region_names = strdup(name);  in parse_regn()
189         cp1 = strtok (regn->region_names,";");  in parse_regn()
197             regn->name[nregions] = cp1;  in parse_regn()
198             regn->code[nregions] = *cp2;  in parse_regn()
203         regn->nregions = nregions;  in parse_regn()
213             if( regn->code[iregion] == 'E' ){  in parse_regn()
215 …         regn->start[iregion] = (iregion ? (regn->start[iregion-1] + regn->length[iregion-1]) : 0);  in parse_regn()
216                 regn->length[iregion] = 0;  in parse_regn()
222 …         regn->start[iregion] = (iregion ? (regn->start[iregion-1] + regn->length[iregion-1]) : 0);  in parse_regn()
223 …       regn->length[iregion] = (ibndy == nbndy ? -1 : (be_int4(bndy[ibndy])-regn->start[iregion]));  in parse_regn()
224                 regn->index[iregion] = index;  in parse_regn()
230         regn->count = 1;  in parse_regn()
232 	hd.p = regn;  in parse_regn()
234 	    free(regn->region_names);  in parse_regn()
235 	    free(regn);  in parse_regn()
239 	regn = (regn_t *)(hi->data.p);  in parse_regn()
240 	regn->count++;  in parse_regn()
257     regn_t *regn = NULL;  in ztr2fastq()  local
275         regn = (regn_t *)(hi->data.p);  in ztr2fastq()
276         if( regn->count == 1 ){  in ztr2fastq()
278             for (iregion=0; iregion<regn->nregions; iregion++) {  in ztr2fastq()
279                 if( regn->code[iregion] == 'E' ) {  in ztr2fastq()
281                     regn->file[iregion] = NULL;  in ztr2fastq()
287 				regn->index[iregion]);  in ztr2fastq()
290 				regn->name[iregion]);  in ztr2fastq()
294                             regn->file[iregion] = files[ifile];  in ztr2fastq()
315                         regn->file[iregion] = fp;  in ztr2fastq()
318                     regn->file[iregion] = stdout;  in ztr2fastq()
375 	     iregion<regn->nregions && iregion<MAX_REGIONS;  in ztr2fastq()
380             if( regn->code[iregion] == 'E' ) {  in ztr2fastq()
389             length = (regn->length[iregion] == -1  in ztr2fastq()
390 		      ? (seq_len-regn->start[iregion])  in ztr2fastq()
391 		      : regn->length[iregion]);  in ztr2fastq()
398                 int n = sprintf(seq,"/%d", regn->index[iregion]);  in ztr2fastq()
410             if( explicit && iregion && regn->code[iregion-1] == 'E' ) {  in ztr2fastq()
415                 qual += strlen(regn->name[iregion-1]);  in ztr2fastq()
422             if( explicit && iregion && regn->code[iregion-1] == 'E' ){  in ztr2fastq()
435                 strcpy(seq, regn->name[iregion-1]);  in ztr2fastq()
436                 seq += strlen(regn->name[iregion-1]);  in ztr2fastq()
437 		memset(qual, '!', strlen(regn->name[iregion-1]));  in ztr2fastq()
438                 qual += strlen(regn->name[iregion-1]);  in ztr2fastq()
458             fwrite(buf, 1, qual - buf, regn->file[iregion]);  in ztr2fastq()
470             for (iregion=0; iregion<regn->nregions; iregion++) {  in ztr2fastq()
471                 if( regn->code[iregion] == 'E' ) {  in ztr2fastq()
476                     qual += strlen(regn->name[iregion]);  in ztr2fastq()
487             for (iregion=0; iregion<regn->nregions; iregion++) {  in ztr2fastq()
489                 if( regn->code[iregion] == 'E' ){  in ztr2fastq()
500                     strcpy(seq, regn->name[iregion]);  in ztr2fastq()
501                     seq += strlen(regn->name[iregion]);  in ztr2fastq()
502 		    memset(qual, '!', strlen(regn->name[iregion]));  in ztr2fastq()
503                     qual += strlen(regn->name[iregion]);  in ztr2fastq()
505                     length = (regn->length[iregion] == -1  in ztr2fastq()
506 			      ? (seq_len-regn->start[iregion])  in ztr2fastq()
507 			      : regn->length[iregion]);  in ztr2fastq()