Lines Matching refs:mintrav
1262 …Parsimony (pllInstance *tr, partitionList *pr, nodeptr p, nodeptr q, int mintrav, int maxtrav, pll… in addTraverseParsimony() argument
1264 if (doAll || (--mintrav <= 0)) in addTraverseParsimony()
1269 addTraverseParsimony(tr, pr, p, q->next->back, mintrav, maxtrav, doAll, saveBranches); in addTraverseParsimony()
1270 addTraverseParsimony(tr, pr, p, q->next->next->back, mintrav, maxtrav, doAll, saveBranches); in addTraverseParsimony()
1316 static int rearrangeParsimony(pllInstance *tr, partitionList *pr, nodeptr p, int mintrav, int maxtr… in rearrangeParsimony() argument
1335 assert(mintrav == 1); in rearrangeParsimony()
1337 if(maxtrav < mintrav) in rearrangeParsimony()
1366 addTraverseParsimony(tr, pr, p, p1->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
1367 … addTraverseParsimony(tr, pr, p, p1->next->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
1372 addTraverseParsimony(tr, pr, p, p2->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
1373 … addTraverseParsimony(tr, pr, p, p2->next->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
1405 mintrav2 = mintrav > 2 ? mintrav : 2; in rearrangeParsimony()