32         outputTypes["fasta"] = tempOutNames;  in setParameters()
33         outputTypes["flow"] = tempOutNames;  in setParameters()
34         outputTypes["fastq"] = tempOutNames;  in setParameters()
35         outputTypes["name"] = tempOutNames;  in setParameters()
36         outputTypes["count"] = tempOutNames;  in setParameters()
37         outputTypes["group"] = tempOutNames;  in setParameters()
38         outputTypes["list"] = tempOutNames;  in setParameters()
265 		itTypes = outputTypes.find("fasta");  in execute()
266 		if (itTypes != outputTypes.end()) {  in execute()
270         itTypes = outputTypes.find("flow");  in execute()
271         if (itTypes != outputTypes.end()) {  in execute()
275 		itTypes = outputTypes.find("name");  in execute()
276 		if (itTypes != outputTypes.end()) {  in execute()
280         itTypes = outputTypes.find("count");  in execute()
281 		if (itTypes != outputTypes.end()) {  in execute()
324 …         params->outputNames.push_back(files[2]); params->outputTypes["group"].push_back(files[2]);  in driverRunNameGroup()
355 …         params->outputNames.push_back(files[0]); params->outputTypes["fasta"].push_back(files[0]);  in driverRunNameGroup()
360 …          params->outputNames.push_back(files[1]); params->outputTypes["list"].push_back(files[1]);  in driverRunNameGroup()
365 …          params->outputNames.push_back(files[3]); params->outputTypes["name"].push_back(files[3]);  in driverRunNameGroup()
412 … params->outputNames.push_back(newCountFile); params->outputTypes["count"].push_back(newCountFile);  in driverRunCount()
427 …         params->outputNames.push_back(files[0]); params->outputTypes["fasta"].push_back(files[0]);  in driverRunCount()
431 …          params->outputNames.push_back(files[1]); params->outputTypes["list"].push_back(files[1]);  in driverRunCount()
477 …for (itTypes = dataBundle->outputTypes.begin(); itTypes != dataBundle->outputTypes.end(); itTypes+…  in splitCountOrGroup()
478 …outputTypes[itTypes->first].insert(outputTypes[itTypes->first].end(), itTypes->second.begin(), itT…  in splitCountOrGroup()
487 …   for (itTypes = data[i]->outputTypes.begin(); itTypes != data[i]->outputTypes.end(); itTypes++) {  in splitCountOrGroup()
488 …outputTypes[itTypes->first].insert(outputTypes[itTypes->first].end(), itTypes->second.begin(), itT…  in splitCountOrGroup()
559 …tput = ""; params->outputNames.push_back(it->second.filename); params->outputTypes["flow"].push_ba…  in driverSplitFlow()
563 …params->outputNames.push_back(it->second.filename); params->outputTypes["flow"].push_back(it->seco…  in driverSplitFlow()
636 …params->outputNames.push_back(it->second.filename); params->outputTypes["fastq"].push_back(it->sec…  in driverSplitFastq()
640 …params->outputNames.push_back(it->second.filename); params->outputTypes["fastq"].push_back(it->sec…  in driverSplitFastq()
685 …for (itTypes = dataBundle->outputTypes.begin(); itTypes != dataBundle->outputTypes.end(); itTypes+…  in splitFastqOrFlow()
686 …outputTypes[itTypes->first].insert(outputTypes[itTypes->first].end(), itTypes->second.begin(), itT…  in splitFastqOrFlow()
693 …   for (itTypes = data[i]->outputTypes.begin(); itTypes != data[i]->outputTypes.end(); itTypes++) {  in splitFastqOrFlow()
694 …outputTypes[itTypes->first].insert(outputTypes[itTypes->first].end(), itTypes->second.begin(), itT…  in splitFastqOrFlow()