Lines Matching +defs:params +defs:edits
288 BlastHSPMapperParams* params; /**< how many hits to save */ member
783 JumperEdit* edits = hsp->map_info->edits->edits + k; in s_TrimHSP() local
826 JumperEdit* edits = hsp->map_info->edits->edits + k; in s_TrimHSP() local
2309 BlastHSPMapperParams* params = spl_data->params; in s_BlastHSPMapperFinal() local
2468 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2476 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2489 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2542 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2686 JumperEditsBlock* edits) in s_ExtendAlignmentCleanup()
2710 JumperEditsBlock* edits = NULL; in s_ExtendAlignment() local
4542 BlastHSPMapperParams* params = spl_data->params; in s_BlastHSPMapperSplicedPairedRun() local
4783 s_BlastHSPMapperPairedNew(void* params, BlastQueryInfo* query_info, in s_BlastHSPMapperPairedNew()
4850 BlastHSPMapperInfoNew(BlastHSPMapperParams* params) { in BlastHSPMapperInfoNew()