89         const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>((*it).GetPointer());  in GetApplyObjectsFromRelatedObjects()  local
98             CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation());  in GetApplyObjectsFromRelatedObjects()
99             CRef<CApplyObject> apply(new CApplyObject(bsh, *obj_feat));  in GetApplyObjectsFromRelatedObjects()
214 vector<CConstRef<CSeq_feat> > GetRelatedFeatures (const CSeq_feat& obj_feat, CSeqFeatData::ESubtype…  in GetRelatedFeatures()  argument
218     CSeqFeatData::ESubtype obj_type = obj_feat.GetData().GetSubtype();  in GetRelatedFeatures()
225         CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation());  in GetRelatedFeatures()
229         CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation());  in GetRelatedFeatures()
242             if (obj_feat.IsSetProduct()) {  in GetRelatedFeatures()
243                 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetProduct());  in GetRelatedFeatures()
247             const CSeq_feat* cds = sequence::GetBestCdsForMrna(obj_feat, *scope);  in GetRelatedFeatures()
253             feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats);  in GetRelatedFeatures()
262             CConstRef<CSeq_feat> f = sequence::GetOverlappingGene(obj_feat.GetLocation(), *scope);  in GetRelatedFeatures()
268             sequence::GetOverlappingFeatures (obj_feat.GetLocation(),  in GetRelatedFeatures()
278             CConstRef<CSeq_feat> f = sequence::GetBestMrnaForCds(obj_feat, *scope);  in GetRelatedFeatures()
283             CConstRef<CSeq_feat> f(&obj_feat);  in GetRelatedFeatures()