Lines Matching refs:TSignedSeqRange

486 …AddSupport(const TGeneModelList& align_list, TSignedSeqRange inside_range, CGeneModel& gene, TSign…  in AddSupport()
578             TSignedSeqRange local_exon(pe->Start(),pe->Stop());  in GetGenes()
580             TSignedSeqRange exon = seq_map.MapRangeEditedToOrig(local_exon);  in GetGenes()
602         TSignedSeqRange local_reading_frame(g_it->back()->Start(), g_it->front()->Stop());  in GetGenes()
639         TSignedSeqRange reading_frame = seq_map.MapRangeEditedToOrig(local_reading_frame, true);  in GetGenes()
645                    TSignedSeqRange(m_seqscr.From(),m_seqscr.To()),  in GetGenes()
648         TSignedSeqRange start, stop;  in GetGenes()
651 …int utr_len = gene_map.FShiftedLen(TSignedSeqRange(gene.Limits().GetFrom(),reading_frame.GetFrom()…  in GetGenes()
658                 TSignedSeqRange rf = gene_map.MapRangeOrigToEdited(reading_frame, true);  in GetGenes()
659                 TSignedSeqRange stt(rf.GetFrom()-3,rf.GetFrom()-1);  in GetGenes()
660                 TSignedSeqRange stp(rf.GetTo()+1,rf.GetTo()+3);  in GetGenes()
668 …int utr_len = gene_map.FShiftedLen(TSignedSeqRange(reading_frame.GetTo(),gene.Limits().GetTo()), C…  in GetGenes()
675                 TSignedSeqRange rf = gene_map.MapRangeOrigToEdited(reading_frame, true);  in GetGenes()
676                 TSignedSeqRange stt(rf.GetFrom()-3,rf.GetFrom()-1);  in GetGenes()
677                 TSignedSeqRange stp(rf.GetTo()+1,rf.GetTo()+3);  in GetGenes()