Lines Matching refs:fReverse
653 fReverse = 0x20, in AdjustAlignment() enumerator
662 if( IsReverseComplement() ) flags |= fReverse; in AdjustAlignment()
666 case fSbjMode|fReverse: in AdjustAlignment()
668 case fQryMode|fReverse: return; // do nothing - no offsets in AdjustAlignment()
670 case fSbjMode|fReverse|fFromLt0: in AdjustAlignment()
672 case fQryMode|fReverse|fToMore0: in AdjustAlignment()
678 case fSbjMode|fReverse|fFromLt0: in AdjustAlignment()
679 …case fQryMode|fReverse|fToMore0: if( by > qlength - 1 - GetQueryBounding().GetTo() ) by = qlength … in AdjustAlignment()
705 case fSbjMode|fReverse|fToMore0: in AdjustAlignment()
707 case fQryMode|fReverse|fFromLt0: in AdjustAlignment()
713 case fSbjMode|fReverse|fToMore0: in AdjustAlignment()
714 …case fQryMode|fReverse|fFromLt0: if( by > GetQueryBounding().GetFrom() ) by = GetQueryBounding().G… in AdjustAlignment()
739 case fSbjMode|fReverse|fFromGt0: in AdjustAlignment()
741 case fQryMode|fReverse|fToLess0: in AdjustAlignment()
834 case fSbjMode|fReverse|fToLess0: in AdjustAlignment()
836 case fQryMode|fReverse|fFromGt0: in AdjustAlignment()