Lines Matching refs:idh

130 CDataLoader::GetRecordsNoBlobState(const CSeq_id_Handle& idh,  in GetRecordsNoBlobState()  argument
134 return GetRecords(idh, choice); in GetRecordsNoBlobState()
143 CDataLoader::GetDetailedRecords(const CSeq_id_Handle& idh, in GetDetailedRecords() argument
146 return GetRecords(idh, DetailsToChoice(details)); in GetDetailedRecords()
167 CDataLoader::GetOrphanAnnotRecords(const CSeq_id_Handle& idh, in GetOrphanAnnotRecords() argument
170 return GetRecords(idh, eOrphanAnnot); in GetOrphanAnnotRecords()
175 CDataLoader::GetExternalAnnotRecords(const CSeq_id_Handle& idh, in GetExternalAnnotRecords() argument
178 return GetRecords(idh, eExtAnnot); in GetExternalAnnotRecords()
231 CDataLoader::GetOrphanAnnotRecordsNA(const CSeq_id_Handle& idh, in GetOrphanAnnotRecordsNA() argument
236 return GetOrphanAnnotRecords(idh, sel); in GetOrphanAnnotRecordsNA()
263 CDataLoader::GetExternalAnnotRecordsNA(const CSeq_id_Handle& idh, in GetExternalAnnotRecordsNA() argument
268 return GetExternalAnnotRecords(idh, sel); in GetExternalAnnotRecordsNA()
301 void CDataLoader::GetIds(const CSeq_id_Handle& idh, TIds& ids) in GetIds() argument
303 TTSE_LockSet locks = GetRecordsNoBlobState(idh, eBioseqCore); in GetIds()
305 CConstRef<CBioseq_Info> bs_info = (*it)->FindMatchingBioseq(idh); in GetIds()
314 bool CDataLoader::SequenceExists(const CSeq_id_Handle& idh) in SequenceExists() argument
318 GetIds(idh, ids); in SequenceExists()
323 CSeq_id_Handle CDataLoader::GetAccVer(const CSeq_id_Handle& idh) in GetAccVer() argument
327 GetIds(idh, ids); in GetAccVer()
342 CDataLoader::GetAccVerFound(const CSeq_id_Handle& idh) in GetAccVerFound() argument
347 ret.acc_ver = GetAccVer(idh); in GetAccVerFound()
348 ret.sequence_found = ret.acc_ver || SequenceExists(idh); in GetAccVerFound()
367 TGi CDataLoader::GetGi(const CSeq_id_Handle& idh) in GetGi() argument
371 GetIds(idh, ids); in GetGi()
385 CDataLoader::SGiFound CDataLoader::GetGiFound(const CSeq_id_Handle& idh) in GetGiFound() argument
390 ret.gi = GetGi(idh); in GetGiFound()
391 ret.sequence_found = ret.gi != ZERO_GI || SequenceExists(idh); in GetGiFound()
410 string CDataLoader::GetLabel(const CSeq_id_Handle& idh) in GetLabel() argument
414 GetIds(idh, ids); in GetLabel()
422 TTaxId CDataLoader::GetTaxId(const CSeq_id_Handle& idh) in GetTaxId() argument
425 TTSE_LockSet locks = GetRecordsNoBlobState(idh, eBioseqCore); in GetTaxId()
427 CConstRef<CBioseq_Info> bs_info = (*it)->FindMatchingBioseq(idh); in GetTaxId()
436 TSeqPos CDataLoader::GetSequenceLength(const CSeq_id_Handle& idh) in GetSequenceLength() argument
439 TTSE_LockSet locks = GetRecordsNoBlobState(idh, eBioseqCore); in GetSequenceLength()
441 CConstRef<CBioseq_Info> bs_info = (*it)->FindMatchingBioseq(idh); in GetSequenceLength()
450 CSeq_inst::TMol CDataLoader::GetSequenceType(const CSeq_id_Handle& idh) in GetSequenceType() argument
453 TTSE_LockSet locks = GetRecordsNoBlobState(idh, eBioseqCore); in GetSequenceType()
455 CConstRef<CBioseq_Info> bs_info = (*it)->FindMatchingBioseq(idh); in GetSequenceType()
471 CDataLoader::GetSequenceTypeFound(const CSeq_id_Handle& idh) in GetSequenceTypeFound() argument
476 ret.type = GetSequenceType(idh); in GetSequenceTypeFound()
478 ret.type != CSeq_inst::eMol_not_set || SequenceExists(idh); in GetSequenceTypeFound()
497 int CDataLoader::GetSequenceState(const CSeq_id_Handle& idh) in GetSequenceState() argument
500 TTSE_LockSet locks = GetRecords(idh, eBioseqCore); in GetSequenceState()
502 CConstRef<CBioseq_Info> bs_info = (*it)->FindMatchingBioseq(idh); in GetSequenceState()
515 int CDataLoader::GetSequenceHash(const CSeq_id_Handle& idh) in GetSequenceHash() argument
517 if ( SequenceExists(idh) ) { in GetSequenceHash()
527 CDataLoader::GetSequenceHashFound(const CSeq_id_Handle& idh) in GetSequenceHashFound() argument
532 ret.hash = GetSequenceHash(idh); in GetSequenceHashFound()
536 ret.sequence_found = SequenceExists(idh); in GetSequenceHashFound()