Lines Matching +defs:params +defs:edits
401 BlastHSPMapperParams* params; /**< how many hits to save */ member
2176 BlastHSPMapperParams* params = spl_data->params; in s_BlastHSPMapperFinal() local
2331 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2339 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2352 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2405 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps() local
2542 JumperEditsBlock* edits) in s_ExtendAlignmentCleanup()
2566 JumperEditsBlock* edits = NULL; in s_ExtendAlignment() local
4155 BlastHSPMapperParams* params = spl_data->params; in s_BlastHSPMapperSplicedPairedRun() local
4369 s_BlastHSPMapperPairedNew(void* params, BlastQueryInfo* query_info, in s_BlastHSPMapperPairedNew()
4431 BlastHSPMapperInfoNew(BlastHSPMapperParams* params) { in BlastHSPMapperInfoNew()