interfaces/svdb/svdb.h

53 SVDB_EXTERN const char * CC svdb_accession_2_path( const char * accession );
65 SVDB_EXTERN void * CC svdb_open_path( const char * path );
74 SVDB_EXTERN void CC svdb_close( void * self );
84 SVDB_EXTERN const char * CC svdb_last_err( void );
93 SVDB_EXTERN int CC svdb_is_db( void * self );
102 SVDB_EXTERN int CC svdb_count_tabs( void * self );
112 SVDB_EXTERN const char * CC svdb_tabname( void * self, const int tab_id );
122 SVDB_EXTERN int CC svdb_tab_idx( void * self, const char * name );
132 SVDB_EXTERN int CC svdb_count_cols( void * self, const int tab_id,
143 SVDB_EXTERN const char * CC svdb_colname( void * self, const int tab_id,
155 SVDB_EXTERN int CC svdb_col_idx( void * self, const int tab_id,
167 SVDB_EXTERN int CC svdb_set_column_visibility( void * self, const int tab_id,
178 SVDB_EXTERN int CC svdb_dflt_type_idx( void * self, const int tab_id,
189 SVDB_EXTERN int CC svdb_count_types( void * self, const int tab_id,
200 SVDB_EXTERN const char * CC svdb_typename( void * self, const int tab_id,
212 SVDB_EXTERN int CC svdb_type_idx( void * self, const int tab_id,
223 SVDB_EXTERN int CC svdb_typedomain( void * self, const int tab_id,
234 SVDB_EXTERN int CC svdb_typebits( void * self, const int tab_id,
245 SVDB_EXTERN int CC svdb_typedim( void * self, const int tab_id,
259 SVDB_EXTERN int CC svdb_open_table( void * self, const int tab_id,
270 SVDB_EXTERN int CC svdb_max_colname_length( void * self, const int tab_id,
283 SVDB_EXTERN void CC svdb_set_elem_separator( void * self, const int tab_id,
296 SVDB_EXTERN void CC svdb_set_dim_separator( void * self, const int tab_id,
306 SVDB_EXTERN int CC svdb_is_enabled( void * self, const int tab_id,
317 SVDB_EXTERN unsigned long long int CC svdb_row_range( void * self,
328 SVDB_EXTERN signed long long int CC svdb_first_row( void * self,
340 SVDB_EXTERN int CC svdb_cell( void * self, char * buf, int buflen,
353 SVDB_EXTERN unsigned long long int CC svdb_find_fwd( void * self, const int tab_id,
356 SVDB_EXTERN unsigned long long int CC svdb_find_bwd( void * self, const int tab_id,
368 SVDB_EXTERN int CC svdb_tab_meta_root( void * self, const int tab_id );
379 SVDB_EXTERN int CC svdb_tab_meta_name( void * self, const int tab_id,
390 SVDB_EXTERN int CC svdb_tab_meta_value_len( void * self, const int tab_id,
401 SVDB_EXTERN int CC svdb_tab_meta_value_printable( void * self,
412 SVDB_EXTERN const char * CC svdb_tab_meta_value_ptr( void * self, const int tab_id,
424 SVDB_EXTERN int CC svdb_tab_meta_value( void * self, const int tab_id,
435 SVDB_EXTERN int CC svdb_tab_meta_child_count( void * self,
446 SVDB_EXTERN int CC svdb_tab_meta_child_id( void * self, const int tab_id,
457 SVDB_EXTERN void * CC svdb_open_fastq( const char * path );
464 SVDB_EXTERN void CC svdb_close_fastq( void * self );
475 SVDB_EXTERN int CC svdb_fastq_scope( void * self );
482 SVDB_EXTERN int CC svdb_fastq_readcount( void * self, const unsigned long long int row );
492 SVDB_EXTERN int CC svdb_fastq_name( void * self, char * buf, int buflen,
503 SVDB_EXTERN int CC svdb_fastq_sequence( void * self, char * buf, int buflen,
513 SVDB_EXTERN int CC svdb_fastq_quality( void * self, char * buf, int buflen,
517 SVDB_EXTERN int CC svdb_fastq_rd_type_available( void * self );
519 SVDB_EXTERN int CC svdb_fastq_rd_filter_available( void * self );
521 SVDB_EXTERN int CC svdb_fastq_read_type_is_bio( void * self, int seq, const unsigned long long int …
523 SVDB_EXTERN int CC svdb_fastq_read_filter_is_pass( void * self, int seq, const unsigned long long i…
525 SVDB_EXTERN unsigned long long int CC svdb_fastq_row_count( void * self );