Lines Matching defs:file
47 "file" : "lib/Bio/DB/ESoap.pm", string
51 "file" : "lib/Bio/DB/ESoap/WSDL.pm", string
55 "file" : "lib/Bio/DB/SoapEUtilities.pm", string
59 "file" : "lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm", string
63 "file" : "lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm", string
67 "file" : "lib/Bio/DB/SoapEUtilities/FetchAdaptor.pm", string
71 "file" : "lib/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm", string
75 "file" : "lib/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm", string
79 "file" : "lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm", string
83 "file" : "lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm", string
87 "file" : "lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm", string
91 "file" : "lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm", string
95 "file" : "lib/Bio/DB/SoapEUtilities/Result.pm", string
99 "file" : "lib/Bio/Factory/EMBOSS.pm", string
103 "file" : "lib/Bio/Tools/Run/Alignment/Amap.pm", string
107 "file" : "lib/Bio/Tools/Run/Alignment/Blat.pm", string
111 "file" : "lib/Bio/Tools/Run/Alignment/DBA.pm", string
115 "file" : "lib/Bio/Tools/Run/Alignment/Exonerate.pm", string
119 "file" : "lib/Bio/Tools/Run/Alignment/Gmap.pm", string
123 "file" : "lib/Bio/Tools/Run/Alignment/Kalign.pm", string
127 "file" : "lib/Bio/Tools/Run/Alignment/Lagan.pm", string
131 "file" : "lib/Bio/Tools/Run/Alignment/MAFFT.pm", string
135 "file" : "lib/Bio/Tools/Run/Alignment/MSAProbs.pm", string
139 "file" : "lib/Bio/Tools/Run/Alignment/Muscle.pm", string
143 "file" : "lib/Bio/Tools/Run/Alignment/Pal2Nal.pm", string
147 "file" : "lib/Bio/Tools/Run/Alignment/Probalign.pm", string
151 "file" : "lib/Bio/Tools/Run/Alignment/Probcons.pm", string
155 "file" : "lib/Bio/Tools/Run/Alignment/Proda.pm", string
159 "file" : "lib/Bio/Tools/Run/Alignment/Sim4.pm", string
163 "file" : "lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm", string
167 "file" : "lib/Bio/Tools/Run/Analysis/soap.pm", string
171 "file" : "lib/Bio/Tools/Run/Analysis/soap.pm", string
175 "file" : "lib/Bio/Tools/Run/AnalysisFactory/soap.pm", string
179 "file" : "lib/Bio/Tools/Run/BEDTools.pm", string
183 "file" : "lib/Bio/Tools/Run/BEDTools/Config.pm", string
187 "file" : "lib/Bio/Tools/Run/BlastPlus.pm", string
191 "file" : "lib/Bio/Tools/Run/BlastPlus/Config.pm", string
195 "file" : "lib/Bio/Tools/Run/Coil.pm", string
199 "file" : "lib/Bio/Tools/Run/EMBOSSApplication.pm", string
203 "file" : "lib/Bio/Tools/Run/EMBOSSacd.pm", string
207 "file" : "lib/Bio/Tools/Run/ERPIN.pm", string
211 "file" : "lib/Bio/Tools/Run/Ensembl.pm", string
215 "file" : "lib/Bio/Tools/Run/Eponine.pm", string
219 "file" : "lib/Bio/Tools/Run/FootPrinter.pm", string
223 "file" : "lib/Bio/Tools/Run/Genemark.pm", string
227 "file" : "lib/Bio/Tools/Run/Genewise.pm", string
231 "file" : "lib/Bio/Tools/Run/Genscan.pm", string
235 "file" : "lib/Bio/Tools/Run/Glimmer.pm", string
239 "file" : "lib/Bio/Tools/Run/Hmmer.pm", string
243 "file" : "lib/Bio/Tools/Run/Infernal.pm", string
247 "file" : "lib/Bio/Tools/Run/MCS.pm", string
251 "file" : "lib/Bio/Tools/Run/Match.pm", string
255 "file" : "lib/Bio/Tools/Run/Mdust.pm", string
259 "file" : "lib/Bio/Tools/Run/Phylo/FastTree.pm", string
263 "file" : "lib/Bio/Tools/Run/Phylo/Gerp.pm", string
267 "file" : "lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm", string
271 "file" : "lib/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm", string
275 "file" : "lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm", string
279 "file" : "lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm", string
283 "file" : "lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm", string
287 "file" : "lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm", string
291 "file" : "lib/Bio/Tools/Run/Phylo/LVB.pm", string
295 "file" : "lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm", string
299 "file" : "lib/Bio/Tools/Run/Phylo/Njtree/Best.pm", string
303 "file" : "lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm", string
307 "file" : "lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm", string
311 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/Base.pm", string
315 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm", string
319 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm", string
323 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm", string
327 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm", string
331 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm", string
335 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm", string
339 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm", string
343 "file" : "lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm", string
347 "file" : "lib/Bio/Tools/Run/Phylo/Phyml.pm", string
351 "file" : "lib/Bio/Tools/Run/Phylo/QuickTree.pm", string
355 "file" : "lib/Bio/Tools/Run/Phylo/Raxml.pm", string
359 "file" : "lib/Bio/Tools/Run/Phylo/SLR.pm", string
363 "file" : "lib/Bio/Tools/Run/Phylo/Semphy.pm", string
367 "file" : "lib/Bio/Tools/Run/Primate.pm", string
371 "file" : "lib/Bio/Tools/Run/Primer3.pm", string
375 "file" : "lib/Bio/Tools/Run/Prints.pm", string
379 "file" : "lib/Bio/Tools/Run/Profile.pm", string
383 "file" : "lib/Bio/Tools/Run/Promoterwise.pm", string
387 "file" : "lib/Bio/Tools/Run/Pseudowise.pm", string
391 "file" : "lib/Bio/Tools/Run/RNAMotif.pm", string
395 "file" : "lib/Bio/Tools/Run/RepeatMasker.pm", string
399 "file" : "lib/Bio/Tools/Run/Samtools.pm", string
403 "file" : "lib/Bio/Tools/Run/Samtools/Config.pm", string
407 "file" : "lib/Bio/Tools/Run/Seg.pm", string
411 "file" : "lib/Bio/Tools/Run/Signalp.pm", string
415 "file" : "lib/Bio/Tools/Run/Simprot.pm", string
419 "file" : "lib/Bio/Tools/Run/StandAloneBlast.pm", string
423 "file" : "lib/Bio/Tools/Run/StandAloneBlastPlus.pm", string
427 "file" : "lib/Bio/Tools/Run/StandAloneNCBIBlast.pm", string
431 "file" : "lib/Bio/Tools/Run/StandAloneWUBlast.pm", string
435 "file" : "lib/Bio/Tools/Run/Tmhmm.pm", string
439 "file" : "lib/Bio/Tools/Run/TribeMCL.pm", string
443 "file" : "lib/Bio/Tools/Run/Vista.pm", string
447 "file" : "lib/Bio/Tools/Run/tRNAscanSE.pm", string