Lines Matching refs:bedfile

868 int32_t populate_roh_slots_from_disk(FILE* bedfile, uint64_t bed_offset, uintptr_t* rawbuf, uintptr…  in populate_roh_slots_from_disk()  argument
877 if (fseeko(bedfile, bed_offset + ((uint64_t)marker_uidx) * unfiltered_sample_ct4, SEEK_SET)) { in populate_roh_slots_from_disk()
885 if (fseeko(bedfile, bed_offset + ((uint64_t)marker_uidx) * unfiltered_sample_ct4, SEEK_SET)) { in populate_roh_slots_from_disk()
889 if (load_raw(unfiltered_sample_ct4, bedfile, rawbuf)) { in populate_roh_slots_from_disk()
1333 int32_t roh_pool(Homozyg_info* hp, FILE* bedfile, uint64_t bed_offset, char* outname, char* outname… in roh_pool() argument
1794 …retval = populate_roh_slots_from_disk(bedfile, bed_offset, rawbuf, marker_exclude, unfiltered_samp… in roh_pool()
1826 …if (fseeko(bedfile, bed_offset + ((uint64_t)lookahead_end_uidx) * unfiltered_sample_ct4, SEEK_SET)… in roh_pool()
1836 …if (fseeko(bedfile, bed_offset + ((uint64_t)lookahead_end_uidx) * unfiltered_sample_ct4, SEEK_SET)… in roh_pool()
1843 if (load_raw(unfiltered_sample_ct4, bedfile, &(lookahead_buf[ulii * unfiltered_sample_ctl2]))) { in roh_pool()
1861 …retval = populate_roh_slots_from_disk(bedfile, bed_offset, rawbuf, marker_exclude, unfiltered_samp… in roh_pool()
2426 int32_t calc_homozyg(Homozyg_info* hp, FILE* bedfile, uintptr_t bed_offset, uint32_t marker_ct, uin… in calc_homozyg() argument
2561 if (fseeko(bedfile, bed_offset, SEEK_SET)) { in calc_homozyg()
2573 if (fseeko(bedfile, bed_offset + (uint64_t)marker_uidx * unfiltered_sample_ct4, SEEK_SET)) { in calc_homozyg()
2595 if (fseeko(bedfile, bed_offset + (uint64_t)marker_uidx * unfiltered_sample_ct4, SEEK_SET)) { in calc_homozyg()
2603 …if (load_and_collapse(unfiltered_sample_ct, sample_ct, sample_exclude, final_mask, 0, bedfile, raw… in calc_homozyg()
2656 if (fseeko(bedfile, bed_offset + (uint64_t)marker_uidx * unfiltered_sample_ct4, SEEK_SET)) { in calc_homozyg()
2664 …if (load_and_collapse(unfiltered_sample_ct, sample_ct, sample_exclude, final_mask, 0, bedfile, raw… in calc_homozyg()
2727 …retval = roh_pool(hp, bedfile, bed_offset, outname, outname_end, rawbuf, marker_exclude, marker_id… in calc_homozyg()