Lines Matching refs:already_processed

438         already_processed = []
439 self.exportAttributes(outfile, level, already_processed, namespace_, name_='orthoXML')
447 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='orthoXML… argument
448 if self.origin is not None and 'origin' not in already_processed:
449 already_processed.append('origin')
451 if self.version is not None and 'version' not in already_processed:
452 already_processed.append('version')
454 if self.originVersion is not None and 'originVersion' not in already_processed:
455 already_processed.append('originVersion')
481 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
482 if self.origin is not None and 'origin' not in already_processed:
483 already_processed.append('origin')
486 if self.version is not None and 'version' not in already_processed:
487 already_processed.append('version')
490 if self.originVersion is not None and 'originVersion' not in already_processed:
491 already_processed.append('originVersion')
530 def buildAttributes(self, node, attrs, already_processed): argument
532 if value is not None and 'origin' not in already_processed:
533 already_processed.append('origin')
536 if value is not None and 'version' not in already_processed:
537 already_processed.append('version')
543 if value is not None and 'originVersion' not in already_processed:
544 already_processed.append('originVersion')
600 already_processed = []
601 self.exportAttributes(outfile, level, already_processed, namespace_, name_='species')
609 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='species'… argument
610 if self.name is not None and 'name' not in already_processed:
611 already_processed.append('name')
613 if self.NCBITaxId is not None and 'NCBITaxId' not in already_processed:
614 already_processed.append('NCBITaxId')
634 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
635 if self.name is not None and 'name' not in already_processed:
636 already_processed.append('name')
639 if self.NCBITaxId is not None and 'NCBITaxId' not in already_processed:
640 already_processed.append('NCBITaxId')
667 def buildAttributes(self, node, attrs, already_processed): argument
669 if value is not None and 'name' not in already_processed:
670 already_processed.append('name')
673 if value is not None and 'NCBITaxId' not in already_processed:
674 already_processed.append('NCBITaxId')
731 already_processed = []
732 self.exportAttributes(outfile, level, already_processed, namespace_, name_='database')
740 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='database… argument
741 if self.transcriptLink is not None and 'transcriptLink' not in already_processed:
742 already_processed.append('transcriptLink')
744 if self.protLink is not None and 'protLink' not in already_processed:
745 already_processed.append('protLink')
747 if self.geneLink is not None and 'geneLink' not in already_processed:
748 already_processed.append('geneLink')
750 if self.name is not None and 'name' not in already_processed:
751 already_processed.append('name')
753 if self.version is not None and 'version' not in already_processed:
754 already_processed.append('version')
771 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
772 if self.transcriptLink is not None and 'transcriptLink' not in already_processed:
773 already_processed.append('transcriptLink')
776 if self.protLink is not None and 'protLink' not in already_processed:
777 already_processed.append('protLink')
780 if self.geneLink is not None and 'geneLink' not in already_processed:
781 already_processed.append('geneLink')
784 if self.name is not None and 'name' not in already_processed:
785 already_processed.append('name')
788 if self.version is not None and 'version' not in already_processed:
789 already_processed.append('version')
804 def buildAttributes(self, node, attrs, already_processed): argument
806 if value is not None and 'transcriptLink' not in already_processed:
807 already_processed.append('transcriptLink')
810 if value is not None and 'protLink' not in already_processed:
811 already_processed.append('protLink')
814 if value is not None and 'geneLink' not in already_processed:
815 already_processed.append('geneLink')
818 if value is not None and 'name' not in already_processed:
819 already_processed.append('name')
822 if value is not None and 'version' not in already_processed:
823 already_processed.append('version')
855 already_processed = []
856 self.exportAttributes(outfile, level, already_processed, namespace_, name_='genes')
864 … def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='genes'): argument
881 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
901 def buildAttributes(self, node, attrs, already_processed): argument
954 already_processed = []
955 self.exportAttributes(outfile, level, already_processed, namespace_, name_='gene')
962 … def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='gene'): argument
963 if self.protId is not None and 'protId' not in already_processed:
964 already_processed.append('protId')
966 if self.id is not None and 'id' not in already_processed:
967 already_processed.append('id')
969 if self.geneId is not None and 'geneId' not in already_processed:
970 already_processed.append('geneId')
972 if self.transcriptId is not None and 'transcriptId' not in already_processed:
973 already_processed.append('transcriptId')
989 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
990 if self.protId is not None and 'protId' not in already_processed:
991 already_processed.append('protId')
994 if self.id is not None and 'id' not in already_processed:
995 already_processed.append('id')
998 if self.geneId is not None and 'geneId' not in already_processed:
999 already_processed.append('geneId')
1002 if self.transcriptId is not None and 'transcriptId' not in already_processed:
1003 already_processed.append('transcriptId')
1013 def buildAttributes(self, node, attrs, already_processed): argument
1015 if value is not None and 'protId' not in already_processed:
1016 already_processed.append('protId')
1019 if value is not None and 'id' not in already_processed:
1020 already_processed.append('id')
1026 if value is not None and 'geneId' not in already_processed:
1027 already_processed.append('geneId')
1030 if value is not None and 'transcriptId' not in already_processed:
1031 already_processed.append('transcriptId')
1060 already_processed = []
1061 self.exportAttributes(outfile, level, already_processed, namespace_, name_='scores')
1069 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='scores'): argument
1086 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1106 def buildAttributes(self, node, attrs, already_processed): argument
1140 already_processed = []
1141 self.exportAttributes(outfile, level, already_processed, namespace_, name_='groups')
1149 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='groups'): argument
1166 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1186 def buildAttributes(self, node, attrs, already_processed): argument
1268 already_processed = []
1269 self.exportAttributes(outfile, level, already_processed, namespace_, name_='group')
1277 … def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='group'): argument
1278 if self.id is not None and 'id' not in already_processed:
1279 already_processed.append('id')
1311 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1312 if self.id is not None and 'id' not in already_processed:
1313 already_processed.append('id')
1388 def buildAttributes(self, node, attrs, already_processed): argument
1390 if value is not None and 'id' not in already_processed:
1391 already_processed.append('id')
1457 already_processed = []
1458 self.exportAttributes(outfile, level, already_processed, namespace_, name_='geneRef')
1466 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='geneRef'… argument
1467 if self.id is not None and 'id' not in already_processed:
1468 already_processed.append('id')
1488 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1489 if self.id is not None and 'id' not in already_processed:
1490 already_processed.append('id')
1517 def buildAttributes(self, node, attrs, already_processed): argument
1519 if value is not None and 'id' not in already_processed:
1520 already_processed.append('id')
1565 already_processed = []
1566 self.exportAttributes(outfile, level, already_processed, namespace_, name_='scoreDef')
1573 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='scoreDef… argument
1574 if self.id is not None and 'id' not in already_processed:
1575 already_processed.append('id')
1577 if self.desc is not None and 'desc' not in already_processed:
1578 already_processed.append('desc')
1594 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1595 if self.id is not None and 'id' not in already_processed:
1596 already_processed.append('id')
1599 if self.desc is not None and 'desc' not in already_processed:
1600 already_processed.append('desc')
1610 def buildAttributes(self, node, attrs, already_processed): argument
1612 if value is not None and 'id' not in already_processed:
1613 already_processed.append('id')
1616 if value is not None and 'desc' not in already_processed:
1617 already_processed.append('desc')
1650 already_processed = []
1651 self.exportAttributes(outfile, level, already_processed, namespace_, name_='score')
1658 … def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='score'): argument
1659 if self.id is not None and 'id' not in already_processed:
1660 already_processed.append('id')
1662 if self.value is not None and 'value' not in already_processed:
1663 already_processed.append('value')
1679 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1680 if self.id is not None and 'id' not in already_processed:
1681 already_processed.append('id')
1684 if self.value is not None and 'value' not in already_processed:
1685 already_processed.append('value')
1695 def buildAttributes(self, node, attrs, already_processed): argument
1697 if value is not None and 'id' not in already_processed:
1698 already_processed.append('id')
1701 if value is not None and 'value' not in already_processed:
1702 already_processed.append('value')
1736 already_processed = []
1737 self.exportAttributes(outfile, level, already_processed, namespace_, name_='property')
1744 …def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='property… argument
1745 if self.name is not None and 'name' not in already_processed:
1746 already_processed.append('name')
1748 if self.value is not None and 'value' not in already_processed:
1749 already_processed.append('value')
1765 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1766 if self.name is not None and 'name' not in already_processed:
1767 already_processed.append('name')
1770 if self.value is not None and 'value' not in already_processed:
1771 already_processed.append('value')
1781 def buildAttributes(self, node, attrs, already_processed): argument
1783 if value is not None and 'name' not in already_processed:
1784 already_processed.append('name')
1787 if value is not None and 'value' not in already_processed:
1788 already_processed.append('value')
1828 already_processed = []
1829 self.exportAttributes(outfile, level, already_processed, namespace_, name_='notes')
1833 … def exportAttributes(self, outfile, level, already_processed, namespace_='ortho:', name_='notes'): argument
1851 def exportLiteralAttributes(self, outfile, level, already_processed, name_): argument
1865 def buildAttributes(self, node, attrs, already_processed): argument