Lines Matching refs:__pyx_v_peaks
2121 …UnitPrecompiled_CallerFromPrecompiledPileups *__pyx_v_self, PyObject *__pyx_v_peaks, PyObject *__p…
2122 …piledPileups *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, int __pyx_v_m…
2123 …piledPileups *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, int __pyx_v_m…
2133 …piledPileups *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, int __pyx_v_m…
2135 …UnitPrecompiled_CallerFromPrecompiledPileups *__pyx_v_self, PyObject *__pyx_v_peaks, int __pyx_ski…
2727 …UnitPrecompiled_CallerFromPrecompiledPileups *__pyx_v_self, PyObject *__pyx_v_peaks, int __pyx_v_w…
12236 PyObject *__pyx_v_peaks = NULL; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_call_peaks() local
12396 __pyx_v_peaks = __pyx_t_1; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_call_peaks()
12962 …x_vtab)->__pyx___chrom_call_peak_using_certain_criteria(__pyx_v_self, __pyx_v_peaks, __pyx_v_chrom… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_call_peaks()
13035 __Pyx_INCREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_call_peaks()
13036 __pyx_r = __pyx_v_peaks; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_call_peaks()
13061 __Pyx_XDECREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_call_peaks()
13250 …UnitPrecompiled_CallerFromPrecompiledPileups *__pyx_v_self, PyObject *__pyx_v_peaks, PyObject *__p… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria() argument
13895 __Pyx_INCREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
13896 __pyx_r = __pyx_v_peaks; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14294 …>__pyx___close_peak_with_subpeaks(__pyx_v_self, __pyx_v_peak_content, __pyx_v_peaks, __pyx_v_min_l… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14318 …)->__pyx___close_peak_wo_subpeaks(__pyx_v_self, __pyx_v_peak_content, __pyx_v_peaks, __pyx_v_min_l… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14397 __Pyx_INCREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14398 __pyx_r = __pyx_v_peaks; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14430 …>__pyx___close_peak_with_subpeaks(__pyx_v_self, __pyx_v_peak_content, __pyx_v_peaks, __pyx_v_min_l… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14454 …)->__pyx___close_peak_wo_subpeaks(__pyx_v_self, __pyx_v_peak_content, __pyx_v_peaks, __pyx_v_min_l… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14469 __Pyx_INCREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14470 __pyx_r = __pyx_v_peaks; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___chrom_call_peak_using_certain_criteria()
14534 …piledPileups *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, int __pyx_v_m… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_wo_subpeaks() argument
15148 …__pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_peaks, __pyx_n_s_add); if (unlikely(!__pyx_t_9)) __P… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_wo_subpeaks()
15356 …piledPileups *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, int __pyx_v_m… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_with_subpeaks() argument
15958 …)->__pyx___close_peak_wo_subpeaks(__pyx_v_self, __pyx_v_peak_content, __pyx_v_peaks, __pyx_v_min_l… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_with_subpeaks()
16249 …)->__pyx___close_peak_wo_subpeaks(__pyx_v_self, __pyx_v_peak_content, __pyx_v_peaks, __pyx_v_min_l… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_with_subpeaks()
16629 …__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_peaks, __pyx_n_s_add); if (unlikely(!__pyx_t_2)) __P… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_with_subpeaks()
22505 …piledPileups *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, int __pyx_v_m… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_for_broad_region() argument
22873 …__pyx_t_10 = __Pyx_PyObject_GetAttrStr(__pyx_v_peaks, __pyx_n_s_add); if (unlikely(!__pyx_t_10)) _… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups___close_peak_for_broad_region()
23701 …UnitPrecompiled_CallerFromPrecompiledPileups *__pyx_v_self, PyObject *__pyx_v_peaks, int __pyx_ski… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution() argument
23797 PyObject *__pyx_temp[4] = {__pyx_t_6, __pyx_v_peaks, __pyx_t_3, __pyx_t_4}; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
23807 PyObject *__pyx_temp[4] = {__pyx_t_6, __pyx_v_peaks, __pyx_t_3, __pyx_t_4}; in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
23821 __Pyx_INCREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
23822 __Pyx_GIVEREF(__pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
23823 PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_7, __pyx_v_peaks); in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
23890 …__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_peaks, __pyx_n_s_get_chr_names); if (unlikely(!__pyx… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
23974 …__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_peaks, __pyx_n_s_sort); if (unlikely(!__pyx_t_2)) __… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
24189 …__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_peaks, __pyx_n_s_get_data_from_chrom); if (unlikely(… in __pyx_f_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_refine_peak_from_tags_distribution()
24992 PyObject *__pyx_v_peaks = 0; in __pyx_pw_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_13refine_peak_from_tags_distribution() local
25046 __pyx_v_peaks = values[0]; in __pyx_pw_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_13refine_peak_from_tags_distribution()
25066 …CallPeakUnitPrecompiled_CallerFromPrecompiledPileups *)__pyx_v_self), __pyx_v_peaks, __pyx_v_windo… in __pyx_pw_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_13refine_peak_from_tags_distribution()
25073 …UnitPrecompiled_CallerFromPrecompiledPileups *__pyx_v_self, PyObject *__pyx_v_peaks, int __pyx_v_w… in __pyx_pf_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_12refine_peak_from_tags_distribution() argument
25083 …mPrecompiledPileups->refine_peak_from_tags_distribution(__pyx_v_self, __pyx_v_peaks, 1, &__pyx_t_2… in __pyx_pf_5MACS2_2IO_23CallPeakUnitPrecompiled_28CallerFromPrecompiledPileups_12refine_peak_from_tags_distribution()