Lines Matching refs:tree_index
145 u_node_counts, v_node_counts, _, _, tree_index =\
149 tree_index['length'])
279 u_node_counts, v_node_counts, u_total_count, v_total_count, tree_index =\
282 branch_lengths = tree_index['length']
285 tip_indices = _get_tip_indices(tree_index)
314 counts_by_node, tree_index, branch_lengths = \
324 tree_index)
451 counts_by_node, tree_index, branch_lengths = \
454 return counts_by_node, tree_index, branch_lengths
520 counts_by_node, tree_index, branch_lengths = \
522 tip_indices = _get_tip_indices(tree_index)
548 def _get_tip_indices(tree_index): argument
549 tip_indices = np.array([n.id for n in tree_index['id_index'].values()