Lines Matching defs:fh
234 def _gff3_sniffer(fh): argument
251 def _gff3_to_generator(fh): argument
276 def _generator_to_gff3(obj, fh, skip_subregion=True): argument
293 def _gff3_to_sequence(fh, seq_num=1): argument
298 def _sequence_to_gff3(obj, fh, skip_subregion=True): argument
305 def _gff3_to_dna(fh, seq_num=1): argument
310 def _dna_to_gff3(obj, fh, skip_subregion=True): argument
317 def _gff3_to_interval_metadata(fh, seq_id): argument
343 def _interval_metadata_to_gff3(obj, fh, seq_id, skip_subregion=True): argument
360 def _construct_seq(fh, constructor=DNA, seq_num=1): argument
371 def _yield_record(fh): argument
453 def _serialize_interval_metadata(interval_metadata, seq_id, fh, argument
533 def _serialize_seq(seq, fh, skip_subregion=True): argument