Lines Matching refs:NT_LOCAL_SHIFT
235 #define NT_LOCAL_SHIFT 16 macro
546 qr_shift = (qr+1) << NT_LOCAL_SHIFT; in aln_local_core()
574 tmp = *s >> NT_LOCAL_SHIFT; tmp2 = *s & NT_LOCAL_MASK; in aln_local_core()
579 *s = (tmp << NT_LOCAL_SHIFT) | tmp2; in aln_local_core()
584 curr_h = (*s >> NT_LOCAL_SHIFT) + score_array[i]; in aln_local_core()
591 curr_last_h = *(s+1) >> NT_LOCAL_SHIFT; in aln_local_core()
594 *s = (last_h << NT_LOCAL_SHIFT) | e; in aln_local_core()
595 } else *s = last_h << NT_LOCAL_SHIFT; /* e = 0 */ in aln_local_core()
602 *s = last_h << NT_LOCAL_SHIFT; in aln_local_core()
614 …eh[end_i] = ((NT_LOCAL_SCORE)(qr + score_r)) << NT_LOCAL_SHIFT; /* in order to initialize f and e,… in aln_local_core()
629 tmp = *s >> NT_LOCAL_SHIFT; tmp2 = *s & NT_LOCAL_MASK; in aln_local_core()
634 *s = (tmp << NT_LOCAL_SHIFT) | tmp2; in aln_local_core()
639 curr_h = (*s >> NT_LOCAL_SHIFT) + score_array[i]; in aln_local_core()
646 curr_last_h = *(s-1) >> NT_LOCAL_SHIFT; in aln_local_core()
649 *s = (last_h << NT_LOCAL_SHIFT) | e; in aln_local_core()
650 } else *s = last_h << NT_LOCAL_SHIFT; /* e = 0 */ in aln_local_core()
660 *s = last_h << NT_LOCAL_SHIFT; in aln_local_core()
662 if ((eh[start] >> NT_LOCAL_SHIFT) <= qr) --start; in aln_local_core()