799 numGaps(TShape & currShape)  in numGaps()  argument
804     while (j < length(currShape))  in numGaps()
806         if (currShape[j] == '0')  in numGaps()
862         CharString currShape = records[i].shape;  in pickGappedParams()  local
869         if ((pm_options.chooseUngappedOnly && numGaps(currShape) > 0) ||  in pickGappedParams()
870             (pm_options.chooseOneGappedOnly && numGaps(currShape) > 1))  in pickGappedParams()
876             for (unsigned pos = 0; pos < length(currShape); ++pos)  in pickGappedParams()
877                 if (currShape[pos] == '1')  in pickGappedParams()
895                         if (undecided && length(shapes[weight - 1]) > length(currShape))  in pickGappedParams()
897                         else if (undecided && length(shapes[weight - 1]) < length(currShape))  in pickGappedParams()
904                     shapes[weight - 1] = currShape;  in pickGappedParams()
914                 shapes[weight - 1] = currShape;  in pickGappedParams()
988     CharString currShape;  in parseGappedParams()  local
1001         readShape(currShape, reader);  in parseGappedParams()
1002 …pm_options.chooseUngappedOnly && numGaps(currShape) > 0) || (pm_options.chooseOneGappedOnly && num…  in parseGappedParams()
1028             for (unsigned pos = 0; pos < length(currShape); ++pos)  in parseGappedParams()
1029                 if (currShape[pos] == '1')  in parseGappedParams()
1049                         if (undecided && length(shapes[weight - 1]) > length(currShape))  in parseGappedParams()
1054                         else if (undecided && length(shapes[weight - 1]) < length(currShape))  in parseGappedParams()
1064                     shapes[weight - 1] = currShape;  in parseGappedParams()
1074                 shapes[weight - 1] = currShape;  in parseGappedParams()