84                       TOutGraph& gOut)  in _createAlignmentGraph()  argument
101 …  TVertexDescriptor l = addVertex(gOut, sequenceId(g, v), fragmentBegin(g,v), fragmentLength(g,v));  in _createAlignmentGraph()
106                 addEdge(gOut, (TVertexDescriptor) (l - count), (TVertexDescriptor) l);  in _createAlignmentGraph()
132                      TOutGraph& gOut)  in progressiveAlignment()  argument
179     _createAlignmentGraph(g, segString[rootVertex], gOut);  in progressiveAlignment()
196                      TOutGraph& gOut,  in _createMatchingGraph()  argument
220                 TVertexDescriptor v1New = findVertex(gOut, sequenceId(g, v1), fragmentBegin(g,v1));  in _createMatchingGraph()
221 …if (v1New == nilVertex) v1New = addVertex(gOut, sequenceId(g, v1), fragmentBegin(g,v1), fragmentLe…  in _createMatchingGraph()
222                 TVertexDescriptor v2New = findVertex(gOut, sequenceId(g, v2), fragmentBegin(g,v2));  in _createMatchingGraph()
223 …if (v2New == nilVertex) v2New = addVertex(gOut, sequenceId(g, v2), fragmentBegin(g,v2), fragmentLe…  in _createMatchingGraph()
226                 addEdge(gOut, v1New, v2New, cargo(e));  in _createMatchingGraph()
465                     TOutGraph& gOut,  in progressiveMatching()  argument
479     _createMatchingGraph(g, alignSeq, edgeMap, gOut, edgeMapOut);  in progressiveMatching()