Lines Matching refs:score_

186 …computeChain( TSource & source, TDest & dest, Score< TScoreValue, TScoreType > const & score_, TSt…
195 			case 2: if( scoreMismatch( score_ ) == 0 && scoreGap( score_ ) == 0 )
197 …return _computeChain( source, dest, GZeroCost(), score_, structuring, ChainSpecType_< Array< 1 > >…
199 					else if( scoreMismatch( score_ ) > 0 && scoreGap( score_ ) > 0 )
201 						if( scoreMismatch( score_ ) == scoreGap( score_ ) )
202 …return _computeChain( source, dest, GOneCost(), score_, structuring, ChainSpecType_< Array< 1 > >(…
204 …return _computeChain( source, dest, GSumOfPairCost(), score_, structuring,ChainSpecType_< Array< 2…
208 			case 3: if( scoreMismatch( score_ ) == 0 && scoreGap( score_ ) == 0 )
209 …return _computeChain( source, dest, GZeroCost(), score_, structuring, ChainSpecType_< Array< 2 > >…
210 					else if( scoreMismatch( score_ ) > 0 && scoreGap( score_ ) > 0 )
212 						if( scoreMismatch( score_ ) == scoreGap( score_ ) )
213 …return _computeChain( source, dest, GOneCost(), score_, structuring, ChainSpecType_< Array< 2 > >(…
215 …return _computeChain( source, dest, GSumOfPairCost(), score_, structuring,ChainSpecType_< Array< 3…
219 			case 4:	if( scoreMismatch( score_ ) == 0 && scoreGap( score_ ) == 0 )
220 …return _computeChain( source, dest, GZeroCost(), score_, structuring, ChainSpecType_< Array< 3 > >…
221 					else if( scoreMismatch( score_ ) > 0 && scoreGap( score_ ) > 0 )
223 						if( scoreMismatch( score_ ) == scoreGap( score_ ) )
224 …return _computeChain( source, dest, GOneCost(), score_, structuring, ChainSpecType_< Array< 3 > >(…
226 …return _computeChain( source, dest, GSumOfPairCost(), score_, structuring,ChainSpecType_< Array< 4…
230 			case 5:	if( scoreMismatch( score_ ) == 0 && scoreGap( score_ ) == 0 )
231 …return _computeChain( source, dest, GZeroCost(), score_, structuring, ChainSpecType_< Array< 4 > >…
232 					else if( scoreMismatch( score_ ) > 0 && scoreGap( score_ ) > 0 )
234 						if( scoreMismatch( score_ ) == scoreGap( score_ ) )
235 …return _computeChain( source, dest, GOneCost(), score_, structuring, ChainSpecType_< Array< 4 > >(…
237 …return _computeChain( source, dest, GSumOfPairCost(), score_, structuring,ChainSpecType_< Array< 5…
241 			default:if( scoreMismatch( score_ ) == 0 && scoreGap( score_ ) == 0 )
242 …return _computeChain( source, dest, GZeroCost(), score_, structuring, ChainSpecType_< Default >() …
243 					else if( scoreMismatch( score_ ) > 0 && scoreGap( score_ ) > 0 )
245 						if( scoreMismatch( score_ ) == scoreGap( score_ ) )
246 …return _computeChain( source, dest, GOneCost(), score_, structuring, ChainSpecType_< Default >() );
248 …return _computeChain( source, dest, GSumOfPairCost(), score_, structuring, ChainSpecType_< Default…