Lines Matching refs:strval

191  char * strval;  member
1400 { ERR("CONTROLCHAR %d", (yyvsp[0].strval)[0]); in yyparse()
1473 if (process_header(state,"HD","VN",(yyvsp[0].strval))) return END; in yyparse()
1483 if (process_header(state,"HD","SO",(yyvsp[0].strval))) return END; in yyparse()
1492 if (process_header(state,"HD","GO",(yyvsp[0].strval))) return END; in yyparse()
1530 if (process_header(state,"SQ",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1538 if (!inrange((yyvsp[0].strval),1,INT32_MAX)) in yyparse()
1540 ERR("SQ LN field not in range %s",(yyvsp[0].strval)); in yyparse()
1545 if (process_header(state,"SQ",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1553 if (process_header(state,"SQ",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1561 if (!ismd5((yyvsp[0].strval))) in yyparse()
1563 if (process_header(state,"SQ",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1571 if (process_header(state,"SQ",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1579 if (process_header(state,"SQ",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1611 if (process_header(state,"PG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1619 if (process_header(state,"PG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1627 if (process_header(state,"PG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1635 if (process_header(state,"PG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1643 if (process_header(state,"PG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1651 if (process_header(state,"PG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1659 WARN("Bogus value in PG:%s",(yyvsp[0].strval)); in yyparse()
1683 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1692 strcasecmp((yyvsp[0].strval),"illumina") && /* most frequent */ in yyparse()
1693 strcmp((yyvsp[0].strval),"CAPILLARY") && in yyparse()
1694 strcmp((yyvsp[0].strval),"LS454") && in yyparse()
1695 strcasecmp((yyvsp[0].strval),"solid") && in yyparse()
1696 strcmp((yyvsp[0].strval),"HELICOS") && in yyparse()
1697 strcmp((yyvsp[0].strval),"IONTORRENT") && in yyparse()
1698 strcmp((yyvsp[0].strval),"ONT") && in yyparse()
1699 strcasecmp((yyvsp[0].strval),"pacbio") && in yyparse()
1700 strcmp((yyvsp[0].strval),"\"Complete Genomics\"") && /* not compliant */ in yyparse()
1701 strcmp((yyvsp[0].strval),"illumina Hiseq") && /* most frequent */ in yyparse()
1702 strcmp((yyvsp[0].strval),"COMPLETEGENOMICS") && /* not compliant */ in yyparse()
1703 strcmp((yyvsp[0].strval),"PacBio_SMRT") && /* not compliant */ in yyparse()
1704 strcmp((yyvsp[0].strval),"PacBio_RS") /* not compliant */ in yyparse()
1706 WARN("Invalid Platform %s", (yyvsp[0].strval)); in yyparse()
1707 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1715 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1723 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1731 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1739 if (!isfloworder((yyvsp[0].strval))) in yyparse()
1741 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1749 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1757 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1765 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1773 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1781 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1789 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1797 if (process_header(state,"RG",(yyvsp[-1].strval),(yyvsp[0].strval))) return END; in yyparse()
1805 WARN("Unknown readgroup (RG) tag:%s", (yyvsp[-1].strval)); in yyparse()
1830 DBG("alignment record %s",(yyvsp[-11].strval)); in yyparse()
1831strval),(yyvsp[-10].strval),(yyvsp[-9].strval),(yyvsp[-8].strval),(yyvsp[-7].strval),(yyvsp[-6].st… in yyparse()
1840strval),(yyvsp[-11].strval),(yyvsp[-10].strval),(yyvsp[-9].strval),(yyvsp[-8].strval),(yyvsp[-7].s… in yyparse()