Lines Matching refs:fastaSeqId
171 char *fastaSeqId; member
318 free(self->fastaSeqId); in ReferenceSeq_Whack()
712 char *fastaSeqId = NULL; in ImportFasta() local
743 fastaSeqId = string_dup(&data[seqId], string_size(&data[seqId])); in ImportFasta()
744 if (fastaSeqId == NULL) in ImportFasta()
764 obj->fastaSeqId = fastaSeqId; in ImportFasta()
1123 if (rs->fastaSeqId) in ReferenceSeq_Dump()
1124 ALIGN_CF_DBGF(("fastaSeqId: '%s', ", rs->fastaSeqId)); in ReferenceSeq_Dump()
1286 … int const sameFastaSeqId = rs->fastaSeqId != NULL ? str_weight(rs->fastaSeqId, id, idLen) : 0; in candidates()
1421 if (qry != seq && qry->fastaSeqId != NULL) { in tryFasta()
1422 char const *const substr = strcasestr(qry->fastaSeqId, seqId); in tryFasta()
1424 unsigned const at = substr - qry->fastaSeqId; in tryFasta()
1426 unsigned const qlen = (unsigned)string_size(qry->fastaSeqId); in tryFasta()
1430 bool const leftEdge = at == 0 || qry->fastaSeqId[at - 1] == '|'; in tryFasta()
1431 bool const rightEdge = (at + slen) == qlen || qry->fastaSeqId[at + slen] == '|'; in tryFasta()
1524 if (chosen->seqId == NULL && chosen->fastaSeqId != NULL) in findSeq()
1525 chosen->seqId = string_dup(chosen->fastaSeqId, string_size(chosen->fastaSeqId)); in findSeq()