Lines Matching refs:sra
38 SRA=https://sra-download.ncbi.nlm.nih.gov
39 SRAF=fasp://dbtest@sra-download.ncbi.nlm.nih.gov
46 SRR=$(SRA)/sos2/sra-pub-run-15/$(SRAC)/$(SRAC).4
48 INT=https://sra-download-internal.ncbi.nlm.nih.gov
49 DDB=https://sra-downloadb.be-md.ncbi.nlm.nih.gov
51 SRAI=fasp://dbtest@sra-download-internal.ncbi.nlm.nih.gov
233 @rm -f `pwd`/tmp/sra/$(SRAC).sra
239 ls `pwd`/tmp/sra/$(SRAC).sra > /dev/null && \
330 @rm -f `pwd`/tmp/sra/$(SRAC).sra
336 @ls `pwd`/tmp/sra/$(SRAC).sra > /dev/null
340 @rm -fv `pwd`/tmp/sra/SRR619505.sra
344 @ls `pwd`/tmp/sra/SRR619505.sra > /dev/null
401 @ ls `pwd`/tmp/SRR6667190/SRR6667190.sra > /dev/null
402 @ ls `pwd`/tmp/SRR6667190/SRR6667190.sra.vdbcache > /dev/null
506 echo ls `pwd`/tmp/sra/SRR053325.sra > /dev/null ; \
516 @ rm -fr `pwd`/SRR0* `pwd`/tmp/sra
519 @ ls `pwd`/tmp/sra/SRR045450.sra `pwd`/tmp/sra/$(SRAC).sra > /dev/null
524 rm `pwd`/tmp/sra/$(SRAC).sra && \
527 ls `pwd`/tmp/sra/$(SRAC).sra > /dev/null ; \
535 rm `pwd`/tmp/sra/$(SRAC).sra ; \
538 ls `pwd`/tmp/sra/$(SRAC).sra > /dev/null ; \
566 @ rm -f `pwd`/tmp3/dir/$(SRAC).sra
569 @ ls `pwd`/tmp3/dir/$(SRAC).sra > /dev/null
574 rm -f `pwd`/tmp3/dir/$(SRAC).sra && \
577 ls `pwd`/tmp3/dir/$(SRAC).sra > /dev/null ; \
585 rm -f `pwd`/tmp3/dir/$(SRAC).sra ; \
588 ls `pwd`/tmp3/dir/$(SRAC).sra > /dev/null ; \
633 @ rm -f tmp/sra/SRR0*
638 @ rm -f tmp/sra/*
643 @ rm -f tmp/sra/*
648 @ rm -f tmp/sra/*
653 @ rm -f tmp/sra/*
658 @ rm -f tmp/sra/$(SRAC).sra
674 @ rm -f tmp/sra/*
700 rm -f tmp/sra/* && \
705 rm -f tmp/sra/* && \
710 rm -f tmp/sra/* && \
715 rm -f tmp/sra/* && \
720 rm -f tmp/sra/* && \
732 @ mkdir -p tmp/sra
743 @ echo '123' > tmp/sra/$(SRAC).sra
777 @cd tmp && rm SRR1219879/SRR1219879_dbGaP-0.sra*
778 @cd tmp && rm SRR1219880/SRR1219880_dbGaP-0.sra*
779 @cd tmp && rm SRR1257493/SRR1257493_dbGaP-0.sra*
787 @cd tmp && rm SRR1219879/SRR1219879_dbGaP-0.sra*
788 @cd tmp && rm SRR1219880/SRR1219880_dbGaP-0.sra*
789 @cd tmp && rm SRR1257493/SRR1257493_dbGaP-0.sra*
797 @cd tmp && rm SRR1219879/SRR1219879_dbGaP-0.sra*
798 @cd tmp && rm SRR1219880/SRR1219880_dbGaP-0.sra*
799 @cd tmp && rm SRR1257493/SRR1257493_dbGaP-0.sra*
807 @rm tmp/SRR1219879/SRR1219879_dbGaP-0.sra*
808 @rm tmp/SRR1219880/SRR1219880_dbGaP-0.sra*
809 @rm tmp/SRR1257493/SRR1257493_dbGaP-0.sra*
812 @rm -frv tmp/sra
823 @rm tmp/sra/SRR1219879_dbGaP-0.sra*
824 @rm tmp/sra/SRR1219880_dbGaP-0.sra*
825 @rm tmp/sra/SRR1257493_dbGaP-0.sra*
826 @rmdir tmp/sra
833 @rm tmp/sra/SRR1219879_dbGaP-0.sra*
834 @rm tmp/sra/SRR1219880_dbGaP-0.sra*
835 @rm tmp/sra/SRR1257493_dbGaP-0.sra*
836 @rmdir tmp/sra
843 @rm tmp/sra/SRR1219879_dbGaP-0.sra*
844 @rm tmp/sra/SRR1219880_dbGaP-0.sra*
845 @rm tmp/sra/SRR1257493_dbGaP-0.sra*
846 @rmdir tmp/sra
854 @cd tmp && rm SRR1219879/SRR1219879_dbGaP-0.sra*
855 @cd tmp && rm SRR1219880/SRR1219880_dbGaP-0.sra*
856 @cd tmp && rm SRR1257493/SRR1257493_dbGaP-0.sra*
864 @cd tmp && rm SRR1219879/SRR1219879_dbGaP-0.sra*
865 @cd tmp && rm SRR1219880/SRR1219880_dbGaP-0.sra*
866 @cd tmp && rm SRR1257493/SRR1257493_dbGaP-0.sra*
874 @rm tmp/SRR1219879/SRR1219879_dbGaP-0.sra*
875 @rm tmp/SRR1219880/SRR1219880_dbGaP-0.sra*
876 @rm tmp/SRR1257493/SRR1257493_dbGaP-0.sra*
891 @ls tmp/SRR619505/SRR619505.sra tmp/SRR619505/NC_000005.8 > /dev/null
903 @ls tmp/SRR619505/SRR619505.sra tmp/refseq/NC_000005.8 > /dev/null
911 @ls tmp/SRR353827/SRR353827.sra tmp/wgs/AAAB01 > /dev/null
935 @ls tmp/ERR3091357/ERR3091357.sra tmp/wgs/JTFH01 tmp/refseq/KN707955.1 \