85     self->coverage.elem_bits = self->mismatches.elem_bits = self->indels.elem_bits = 32;  in ReferenceInit()
130     KDataBufferWhack(&self->indels);  in Unsorted()
145         unsigned *const indel = (unsigned *)self->indels.base;  in FlushBuffers()
190                 data.indels += indel[offset + i];  in FlushBuffers()
212             memmove(self->indels.base, indel + offset, newBaseCount * sizeof(indel[0]));  in FlushBuffers()
404                           uint32_t const indels,  in ReferenceAddCoverage()  argument
420         BAIL_ON_FAIL(KDataBufferResize(&self->indels, newBaseCount));  in ReferenceAddCoverage()
424 …memset(&((unsigned *)self->indels.base)[baseCount], 0, (newBaseCount - baseCount) * sizeof(unsigne…  in ReferenceAddCoverage()
446         ((unsigned *)self->indels.base)[startBase] += indels;  in ReferenceAddCoverage()
518     unsigned indels = 0;  in ReferenceRead()  local
530     GetCounts(data, seqLen, &nmatch, &nmis, &indels);  in ReferenceRead()
546                                         data->data.ref_len, nmis, indels,  in ReferenceRead()
589         KDataBufferWhack(&self->indels);  in ReferenceWhack()