Lines Matching refs:appendix1
1531 int maximum_open_file = fp_table -> appendix1 - NULL; in get_temp_file_pointer()
1687 …event_table_ptr->appendix1 = realloc(event_table_ptr->appendix1 , sizeof(char *) * event_space_max… in add_cigar_indel_event()
1715 char * ins_seq_2 = malloc(-indels), ** app1_ptrptr = event_table_ptr->appendix1; in add_cigar_indel_event()
1726 char ** seq_tab = event_table->appendix1; in destroy_cigar_event_table()
1752 free(event_table->appendix1); in destroy_cigar_event_table()
1866 fp_table -> appendix1 = NULL + max_open_file * 2/ 3; in break_SAM_file()
1868 if(event_table!=NULL && event_table->appendix1==NULL) in break_SAM_file()
1870 event_table->appendix1 = malloc(sizeof(char *) * 100); in break_SAM_file()
2528 …irer, int thread_no, char * bin1, char * bin2), char * tmp_path, void * appendix1, int long_read_m… in SAM_pairer_create() argument
2567 pairer -> appendix1 = appendix1; in SAM_pairer_create()
3566 SAM_pairer_writer_main_t * bam_main = (SAM_pairer_writer_main_t * )pairer -> appendix1; in SAM_pairer_multi_thread_header()
3771 SAM_pairer_writer_main_t * bam_main = (SAM_pairer_writer_main_t * )pairer -> appendix1; in SAM_pairer_writer_reset()
3788 SAM_pairer_writer_main_t * bam_main = (SAM_pairer_writer_main_t * )pairer -> appendix1; in SAM_pairer_multi_thread_output()
4639 SAM_pairer_context_t * pairer = tab -> appendix1; in SAM_pairer_finish_margins()
4661 pairer -> bam_margin_table -> appendix1 = pairer; in SAM_pairer_finish_margin_table()