Lines Matching refs:U2AssemblyRead

54 …virtual U2DbiIterator<U2AssemblyRead> *getReads(const U2DataId &assemblyId, const U2Region &r, U2O…
60 …virtual U2DbiIterator<U2AssemblyRead> *getReadsByRow(const U2DataId &assemblyId, const U2Region &r…
66 …virtual U2DbiIterator<U2AssemblyRead> *getReadsByName(const U2DataId &assemblyId, const QByteArray…
81 …blyObject(U2Assembly &assembly, const QString &folder, U2DbiIterator<U2AssemblyRead> *it, U2Assemb…
113 …virtual void addReads(const U2DataId &assemblyId, U2DbiIterator<U2AssemblyRead> *it, U2OpStatus &o…
130 …virtual void addReads(AssemblyAdapter *a, U2DbiIterator<U2AssemblyRead> *it, U2AssemblyReadsImport…
160 …static QByteArray packData(SQLiteAssemblyDataMethod method, const U2AssemblyRead &read, U2OpStatus…
162     static void unpackData(const QByteArray &packed, U2AssemblyRead &read, U2OpStatus &os);
166     static void addToCoverage(U2AssemblyCoverageImportInfo &cii, const U2AssemblyRead &read);
169 class SQLiteAssemblyNameFilter : public SQLiteResultSetFilter<U2AssemblyRead> {
174     virtual bool filter(const U2AssemblyRead &r) {  in filter()
182 class SimpleAssemblyReadLoader : public SQLiteResultSetLoader<U2AssemblyRead> {
184     U2AssemblyRead load(SQLiteQuery *q);