Lines Matching refs:os
50 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
54 …GTUtilsDialog::waitForDialog(os, new SequenceReadingModeSelectorDialogFiller(os, SequenceReadingMo… in GUI_TEST_CLASS_DEFINITION()
55 GTUtilsProject::openFile(os, testDir + "_common_data/fasta/alphabet.fa"); in GUI_TEST_CLASS_DEFINITION()
56 GTUtilsSequenceView::checkSequenceViewWindowIsActive(os); in GUI_TEST_CLASS_DEFINITION()
59 GTWidget::click(os, GTUtilsSequenceView::getPanOrDetView(os, 0)); in GUI_TEST_CLASS_DEFINITION()
62 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
65 QWidget *params = GTWidget::findWidget(os, "runPcrWidget"); in GUI_TEST_CLASS_DEFINITION()
66 QWidget *warning = GTWidget::findWidget(os, "algoWarningLabel"); in GUI_TEST_CLASS_DEFINITION()
71 GTWidget::click(os, GTUtilsSequenceView::getPanOrDetView(os, 1)); in GUI_TEST_CLASS_DEFINITION()
79 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
83 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
84 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
87 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
91 QWidget *forwardPrimerBox = GTWidget::findWidget(os, "forwardPrimerBox"); in GUI_TEST_CLASS_DEFINITION()
92 …QLineEdit *forwardPrimerLine = dynamic_cast<QLineEdit *>(GTWidget::findWidget(os, "primerEdit", fo… in GUI_TEST_CLASS_DEFINITION()
93 GTLineEdit::setText(os, forwardPrimerLine, "Q%1", true); in GUI_TEST_CLASS_DEFINITION()
99 GTLineEdit::setText(os, forwardPrimerLine, "atcg", true); in GUI_TEST_CLASS_DEFINITION()
102 …QLabel *statsLabel = dynamic_cast<QLabel *>(GTWidget::findWidget(os, "characteristicsLabel", forwa… in GUI_TEST_CLASS_DEFINITION()
107 GTWidget::click(os, GTWidget::findWidget(os, "reverseComplementButton", forwardPrimerBox)); in GUI_TEST_CLASS_DEFINITION()
114 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
118 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
119 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
122 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
125 QWidget *findButton = GTWidget::findWidget(os, "findProductButton"); in GUI_TEST_CLASS_DEFINITION()
129 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "TTCGGTGATGACGGTGAAAACCTCTGACACATGCAGCT"); in GUI_TEST_CLASS_DEFINITION()
135 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "GTGACCTTGGATGACAATAGGTTCCAAGGCTC"); in GUI_TEST_CLASS_DEFINITION()
141 GTUtilsPcr::setPrimer(os, U2Strand::Direct, ""); in GUI_TEST_CLASS_DEFINITION()
148 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
155 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
156 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
159 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
162 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "TTCGGTGATGACGGTGAAAACCTCTGACACATGCAGCT"); in GUI_TEST_CLASS_DEFINITION()
163 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "GTGACCTTGGATGACAATAGGTTCCAAGGCTC"); in GUI_TEST_CLASS_DEFINITION()
166 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
167 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
170 CHECK_SET_ERR(1 == GTUtilsPcr::productsCount(os), "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
171 CHECK_SET_ERR("9 - 1196" == GTUtilsPcr::getResultRegion(os, 0), "Wrong result"); in GUI_TEST_CLASS_DEFINITION()
174 GTMouseDriver::moveTo(GTUtilsPcr::getResultPoint(os, 0)); in GUI_TEST_CLASS_DEFINITION()
178 QWidget *extractButton = GTWidget::findWidget(os, "extractProductButton"); in GUI_TEST_CLASS_DEFINITION()
182 QPoint emptyPoint = QPoint(GTUtilsPcr::getResultPoint(os, 0)); in GUI_TEST_CLASS_DEFINITION()
191 GTMouseDriver::moveTo(GTUtilsPcr::getResultPoint(os, 0)); in GUI_TEST_CLASS_DEFINITION()
195 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
196 GTUtilsProjectTreeView::findIndex(os, "pIB2-SEC13_9-1196.gb"); in GUI_TEST_CLASS_DEFINITION()
203 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
209 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
210 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
213 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
216 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "CGCGCGTTTCGGTGA"); in GUI_TEST_CLASS_DEFINITION()
217 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "CGGCATCCGCTTACAGAC"); in GUI_TEST_CLASS_DEFINITION()
218 GTUtilsPcr::setMismatches(os, U2Strand::Complementary, 6); in GUI_TEST_CLASS_DEFINITION()
219 GTUtilsPcr::setPerfectMatch(os, 0); in GUI_TEST_CLASS_DEFINITION()
222 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
223 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
226 CHECK_SET_ERR(3 == GTUtilsPcr::productsCount(os), "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
229 GTMouseDriver::moveTo(GTUtilsPcr::getResultPoint(os, 2)); in GUI_TEST_CLASS_DEFINITION()
236 GTMouseDriver::moveTo(GTUtilsPcr::getResultPoint(os, 1)); in GUI_TEST_CLASS_DEFINITION()
245 GTWidget::click(os, GTWidget::findWidget(os, "extractProductButton")); in GUI_TEST_CLASS_DEFINITION()
248 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
249 GTUtilsProjectTreeView::findIndex(os, "pIB2-SEC13_2-133.gb"); in GUI_TEST_CLASS_DEFINITION()
250 GTUtilsProjectTreeView::findIndex(os, "pIB2-SEC13_2-3775.gb"); in GUI_TEST_CLASS_DEFINITION()
259 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
263 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
264 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
267 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
270 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "AGACTCTTTCGTCTCACGCACTTCGCTGATA"); in GUI_TEST_CLASS_DEFINITION()
273 QWidget *warning = GTWidget::findWidget(os, "warningLabel"); in GUI_TEST_CLASS_DEFINITION()
277 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "TGACCGTCTCAGGAGGTGGTTGTGTCAGAGGTTTT"); in GUI_TEST_CLASS_DEFINITION()
280 …QAbstractButton *findButton = dynamic_cast<QAbstractButton *>(GTWidget::findWidget(os, "findProduc… in GUI_TEST_CLASS_DEFINITION()
286 GTUtilsDialog::waitForDialog(os, new PrimersDetailsDialogFiller(os)); in GUI_TEST_CLASS_DEFINITION()
287 GTMouseDriver::moveTo(GTUtilsPcr::getDetailsPoint(os)); in GUI_TEST_CLASS_DEFINITION()
291 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "AGACTCTTTCGTCTCACGCACTTCGCTGAT"); in GUI_TEST_CLASS_DEFINITION()
298 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
304 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
305 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
308 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
311 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "CGCGCGTTTCGGTGA"); in GUI_TEST_CLASS_DEFINITION()
312 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "CGGCATCCGCTTACAGAC"); in GUI_TEST_CLASS_DEFINITION()
315 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
316 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
319 CHECK_SET_ERR(1 == GTUtilsPcr::productsCount(os), "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
322 GTUtilsPcr::setMismatches(os, U2Strand::Complementary, 6); in GUI_TEST_CLASS_DEFINITION()
323 GTUtilsPcr::setPerfectMatch(os, 0); in GUI_TEST_CLASS_DEFINITION()
324 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
325 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
328 CHECK_SET_ERR(3 == GTUtilsPcr::productsCount(os), "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
331 GTUtilsPcr::setMaxProductSize(os, 3773); in GUI_TEST_CLASS_DEFINITION()
332 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
333 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
336 CHECK_SET_ERR(2 == GTUtilsPcr::productsCount(os), "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
340 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
344 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
345 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
348 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
351 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "AGGCCCTTTCGTCTCGCGCGTTTCGGTGATG"); in GUI_TEST_CLASS_DEFINITION()
352 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "TGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTT"); in GUI_TEST_CLASS_DEFINITION()
355 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
356 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
359 CHECK_SET_ERR(0 == GTUtilsPcr::productsCount(os), "Wrong results count 1"); in GUI_TEST_CLASS_DEFINITION()
362 GTMouseDriver::moveTo(GTUtilsProjectTreeView::getItemCenter(os, "pIB2-SEC13")); in GUI_TEST_CLASS_DEFINITION()
363 … GTUtilsDialog::waitForDialog(os, new PopupChooserByText(os, QStringList() << "Mark as circular")); in GUI_TEST_CLASS_DEFINITION()
367 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
368 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
371 CHECK_SET_ERR(1 == GTUtilsPcr::productsCount(os), "Wrong results count 2"); in GUI_TEST_CLASS_DEFINITION()
372 CHECK_SET_ERR("7223 - 60" == GTUtilsPcr::getResultRegion(os, 0), "Wrong result"); in GUI_TEST_CLASS_DEFINITION()
376 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
380 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
381 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
384 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
387 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "CGCGCGTTTCGGTGA"); in GUI_TEST_CLASS_DEFINITION()
388 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "CGACATCCGCTTACAGAC"); in GUI_TEST_CLASS_DEFINITION()
391 GTUtilsPcr::setMismatches(os, U2Strand::Complementary, 1); in GUI_TEST_CLASS_DEFINITION()
394 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
395 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
398 CHECK_SET_ERR(1 == GTUtilsPcr::productsCount(os), "Wrong results count 1"); in GUI_TEST_CLASS_DEFINITION()
401 QSpinBox *perfectSpinBox = dynamic_cast<QSpinBox *>(GTWidget::findWidget(os, "perfectSpinBox")); in GUI_TEST_CLASS_DEFINITION()
402 GTSpinBox::setValue(os, perfectSpinBox, 16, GTGlobals::UseKeyBoard); in GUI_TEST_CLASS_DEFINITION()
405 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
406 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
409 CHECK_SET_ERR(0 == GTUtilsPcr::productsCount(os), "Wrong results count 2"); in GUI_TEST_CLASS_DEFINITION()
415 GTFileDialog::openFile(os, testDir + "_common_data/cmdline/pcr/begin-end.gb"); in GUI_TEST_CLASS_DEFINITION()
416 GTUtilsSequenceView::checkSequenceViewWindowIsActive(os); in GUI_TEST_CLASS_DEFINITION()
419 GTWidget::click(os, GTWidget::findWidget(os, "OP_IN_SILICO_PCR")); in GUI_TEST_CLASS_DEFINITION()
422 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "GGGCCAAACAGGATATCTGTGGTAAGCAGT"); in GUI_TEST_CLASS_DEFINITION()
425 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "AAGCGCGCGAACAGAAGCGAGAAGCGAACT"); in GUI_TEST_CLASS_DEFINITION()
428 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
429 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
432 CHECK_SET_ERR(GTUtilsPcr::productsCount(os) == 1, "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
435 QComboBox *annsComboBox = qobject_cast<QComboBox *>(GTWidget::findWidget(os, "annsComboBox")); in GUI_TEST_CLASS_DEFINITION()
436 GTComboBox::selectItemByIndex(os, annsComboBox, 1); in GUI_TEST_CLASS_DEFINITION()
439 QWidget *extractPB = GTWidget::findWidget(os, "extractProductButton"); in GUI_TEST_CLASS_DEFINITION()
440 GTUtilsNotifications::waitAllNotificationsClosed(os); in GUI_TEST_CLASS_DEFINITION()
441 GTWidget::click(os, extractPB); in GUI_TEST_CLASS_DEFINITION()
442 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
445 …CHECK_SET_ERR(GTUtilsAnnotationsTreeView::findItem(os, "middle", GTGlobals::FindOptions(false)) ==… in GUI_TEST_CLASS_DEFINITION()
446 …CHECK_SET_ERR("complement(51..150)" == GTUtilsAnnotationsTreeView::getAnnotationRegionString(os, "… in GUI_TEST_CLASS_DEFINITION()
449 GTUtilsProjectTreeView::doubleClickItem(os, "begin-end.gb"); in GUI_TEST_CLASS_DEFINITION()
450 GTUtilsMdi::checkWindowIsActive(os, "begin-end"); in GUI_TEST_CLASS_DEFINITION()
451 GTComboBox::selectItemByIndex(os, annsComboBox, 0); in GUI_TEST_CLASS_DEFINITION()
454 extractPB = GTWidget::findWidget(os, "extractProductButton"); in GUI_TEST_CLASS_DEFINITION()
455 GTUtilsNotifications::waitAllNotificationsClosed(os); in GUI_TEST_CLASS_DEFINITION()
456 GTWidget::click(os, extractPB); in GUI_TEST_CLASS_DEFINITION()
457 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
460 …CHECK_SET_ERR(GTUtilsAnnotationsTreeView::getAnnotationRegionString(os, "middle") == "1..200", "Wr… in GUI_TEST_CLASS_DEFINITION()
461 …CHECK_SET_ERR(GTUtilsAnnotationsTreeView::getAnnotationRegionString(os, "center") == "complement(5… in GUI_TEST_CLASS_DEFINITION()
464 GTUtilsProjectTreeView::doubleClickItem(os, "begin-end.gb"); in GUI_TEST_CLASS_DEFINITION()
465 GTUtilsMdi::checkWindowIsActive(os, "begin-end"); in GUI_TEST_CLASS_DEFINITION()
466 GTComboBox::selectItemByIndex(os, annsComboBox, 2); in GUI_TEST_CLASS_DEFINITION()
469 extractPB = GTWidget::findWidget(os, "extractProductButton"); in GUI_TEST_CLASS_DEFINITION()
470 GTUtilsNotifications::waitAllNotificationsClosed(os); in GUI_TEST_CLASS_DEFINITION()
471 GTWidget::click(os, extractPB); in GUI_TEST_CLASS_DEFINITION()
472 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
475 …CHECK_SET_ERR(GTUtilsAnnotationsTreeView::findItem(os, "middle", GTGlobals::FindOptions(false)) ==… in GUI_TEST_CLASS_DEFINITION()
476 …CHECK_SET_ERR(GTUtilsAnnotationsTreeView::findItem(os, "center", GTGlobals::FindOptions(false)) ==… in GUI_TEST_CLASS_DEFINITION()
481 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
484 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
485 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
488 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
491 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "TTNGGTGATGWCGGTGAAARCCTCTGACMCATGCAGCT"); in GUI_TEST_CLASS_DEFINITION()
494 …CHECK_SET_ERR(!GTUtilsPcr::getPrimerInfo(os, U2Strand::Direct).contains("N/A"), "The temperature i… in GUI_TEST_CLASS_DEFINITION()
497 GTUtilsPcr::setPrimer(os, U2Strand::Direct, ""); in GUI_TEST_CLASS_DEFINITION()
500 …CHECK_SET_ERR(GTUtilsPcr::getPrimerInfo(os, U2Strand::Direct).isEmpty(), "The temperature was not … in GUI_TEST_CLASS_DEFINITION()
503 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "TTCGGTS"); in GUI_TEST_CLASS_DEFINITION()
505 …CHECK_SET_ERR(GTUtilsPcr::getPrimerInfo(os, U2Strand::Direct).contains("N/A"), "The temperature is… in GUI_TEST_CLASS_DEFINITION()
510 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
513 GTFileDialog::openFile(os, testDir + "_common_data/cmdline/pcr/begin-end.gb"); in GUI_TEST_CLASS_DEFINITION()
514 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
517 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
520 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "KGGCCAHACAGRATATCTSTGGTAAGCAGT"); in GUI_TEST_CLASS_DEFINITION()
523 …CHECK_SET_ERR(!GTUtilsPcr::getPrimerInfo(os, U2Strand::Direct).contains("N/A"), "The temperature i… in GUI_TEST_CLASS_DEFINITION()
526 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "NNNNNNNNNNNNNNNNNNNNNNNNNNNNNR"); in GUI_TEST_CLASS_DEFINITION()
529 …CHECK_SET_ERR(GTUtilsPcr::getPrimerInfo(os, U2Strand::Complementary).contains("N/A"), "The tempera… in GUI_TEST_CLASS_DEFINITION()
531 QLabel *warningLabel = qobject_cast<QLabel *>(GTWidget::findWidget(os, "warningLabel")); in GUI_TEST_CLASS_DEFINITION()
538 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
541 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
542 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
545 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
548 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "TTNGGTGATGWCGGTGAAARCCTCTGACMCATGCAGCT"); in GUI_TEST_CLASS_DEFINITION()
551 …CHECK_SET_ERR(!GTUtilsPcr::getPrimerInfo(os, U2Strand::Direct).contains("N/A"), "The temperature i… in GUI_TEST_CLASS_DEFINITION()
554 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "GBGNCCTTGGATGACAATVGGTTCCAAGRCTC"); in GUI_TEST_CLASS_DEFINITION()
557 …CHECK_SET_ERR(!GTUtilsPcr::getPrimerInfo(os, U2Strand::Complementary).contains("N/A"), "The temper… in GUI_TEST_CLASS_DEFINITION()
560 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
561 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
564 CHECK_SET_ERR(1 == GTUtilsPcr::productsCount(os), "Wrong results count"); in GUI_TEST_CLASS_DEFINITION()
565 CHECK_SET_ERR("9 - 1196" == GTUtilsPcr::getResultRegion(os, 0), "Wrong result"); in GUI_TEST_CLASS_DEFINITION()
574 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
576 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
577 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
579 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
581 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "ACGTMRWSYKVHDBNX"); in GUI_TEST_CLASS_DEFINITION()
583 …GTWidget::click(os, GTWidget::findWidget(os, "reverseComplementButton", GTUtilsPcr::primerBox(os, … in GUI_TEST_CLASS_DEFINITION()
585 …rimerLineEdit = GTWidget::findExactWidget<QLineEdit *>(os, "primerEdit", GTUtilsPcr::primerBox(os,… in GUI_TEST_CLASS_DEFINITION()
595 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
596 GTFileDialog::openFile(os, dataDir + "samples/Genbank/", "murine.gb"); in GUI_TEST_CLASS_DEFINITION()
597 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
602 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
603 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "ACCCGTAGGTGGCAAGCTAGCTTAA"); in GUI_TEST_CLASS_DEFINITION()
604 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "TTTTCTATTCTCAGTTATGTATTTTT"); in GUI_TEST_CLASS_DEFINITION()
608 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
609 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
610 CHECK_SET_ERR(2 == GTUtilsPcr::productsCount(os), "Wrong results count 1"); in GUI_TEST_CLASS_DEFINITION()
613 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "TTTTCTATTCTCAGTTATGTATTTTA"); in GUI_TEST_CLASS_DEFINITION()
616 GTUtilsPcr::setMismatches(os, U2Strand::Complementary, 1); in GUI_TEST_CLASS_DEFINITION()
620 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
621 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
622 CHECK_SET_ERR(0 == GTUtilsPcr::productsCount(os), "Wrong results count 2"); in GUI_TEST_CLASS_DEFINITION()
625 GTUtilsPcr::setPrimer(os, U2Strand::Complementary, "ATTTCTATTCTCAGTTATGTATTTTW"); in GUI_TEST_CLASS_DEFINITION()
629 GTWidget::click(os, GTWidget::findWidget(os, "findProductButton")); in GUI_TEST_CLASS_DEFINITION()
630 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
631 CHECK_SET_ERR(2 == GTUtilsPcr::productsCount(os), "Wrong results count 3"); in GUI_TEST_CLASS_DEFINITION()
637 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
638 GTFileDialog::openFile(os, dataDir + "samples/Genbank/", "murine.gb"); in GUI_TEST_CLASS_DEFINITION()
639 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
642 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
645 GTUtilsPcr::setPrimer(os, U2Strand::Direct, "---"); in GUI_TEST_CLASS_DEFINITION()
648 …rEdit = dynamic_cast<QLineEdit *>(GTWidget::findWidget(os, "primerEdit", GTUtilsPcr::primerBox(os,… in GUI_TEST_CLASS_DEFINITION()
658 GTUtilsPcr::clearPcrDir(os); in GUI_TEST_CLASS_DEFINITION()
660 GTFileDialog::openFile(os, testDir + "_common_data/fasta", "pcr_test.fa"); in GUI_TEST_CLASS_DEFINITION()
661 GTUtilsTaskTreeView::waitTaskFinished(os); in GUI_TEST_CLASS_DEFINITION()
663 GTUtilsOptionPanelSequenceView::openTab(os, GTUtilsOptionPanelSequenceView::InSilicoPcr); in GUI_TEST_CLASS_DEFINITION()
665 …erEdit = dynamic_cast<QLineEdit *>(GTWidget::findWidget(os, "primerEdit", GTWidget::findWidget(os,… in GUI_TEST_CLASS_DEFINITION()
666 GTLineEdit::setText(os, primerEdit, "AC\r\nCCTG GAGAG\nCATCG\tAT", true, true); in GUI_TEST_CLASS_DEFINITION()