Lines Matching refs:importers

447         foreach (AssemblyImporter *importer, importers) {  in run()
450 qDeleteAll(importers); in run()
451 importers.clear(); in run()
463 qDeleteAll(importers); in run()
464 importers.clear(); in run()
472 qDeleteAll(importers); in run()
473 importers.clear(); in run()
516 importers[referenceId] = new AssemblyImporter(stateInfo); in importReads()
527 foreach (int referenceId, importers.keys()) { in importReads()
528 if (!importers[referenceId]->isObjectExist()) { in importReads()
529 delete importers[referenceId]; in importReads()
530 importers.remove(referenceId); in importReads()
541 foreach (int referenceId, importers.keys()) { in packReads()
542 … SAFE_POINT_EXT(importers.contains(referenceId), throw Exception("An unexpected assembly"), ); in packReads()
544 .arg(importers[referenceId]->getAssembly().visualName) in packReads()
548 importers[referenceId]->packReads(importInfos[referenceId]); in packReads()
559 foreach (int referenceId, importers.keys()) { in updateAttributes()
560 const U2Assembly &assembly = importers[referenceId]->getAssembly(); in updateAttributes()
622 …SAFE_POINT_EXT(importers.contains(referenceId), throw Exception("An unexpected assembly"), totalRe… in importMappedSortedReads()
623importers[referenceId]->createAssembly(dstDbiRef, U2ObjectDbi::ROOT_FOLDER, dbiIterator.data(), im… in importMappedSortedReads()
682 SAFE_POINT_EXT(importers.contains(-1), throw Exception("An unexpected assembly"), 0); in importUnmappedSortedReads()
683importers[-1]->createAssembly(dstDbiRef, U2ObjectDbi::ROOT_FOLDER, &dbiIterator, importInfos[-1], … in importUnmappedSortedReads()
728 SAFE_POINT_EXT(importers.contains(referenceId), throw Exception("An unexpected assembly"), ); in createAssemblyObjectForUnsortedReads()
729 importers[referenceId]->createAssembly(dstDbiRef, U2ObjectDbi::ROOT_FOLDER, assembly); in createAssemblyObjectForUnsortedReads()
773 SAFE_POINT_EXT(importers.contains(index), throw Exception("An unexpected assembly"), ); in flushReads()
774 importers[index]->addReads(&readsIterator); in flushReads()