Lines Matching refs:XTN

474     xmx[0][XMB] = hmm->xsc[XTN][MOVE];                 /* S->N->B, no N-tail   */  in P7Forward()
509 xmx[i][XMN] = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]; in P7Forward()
518 xmx[i][XMB] = ILogsum(xmx[i][XMN] + hmm->xsc[XTN][MOVE], in P7Forward()
576 xmx[0][XMB] = hmm->xsc[XTN][MOVE]; /* S->N->B, no N-tail */ in P7Viterbi()
627 if ((sc = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7Viterbi()
644 if ((sc = xmx[i][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in P7Viterbi()
811 else if (i > 0 && xmx[i+1][XMN] == xmx[i][XMN] + hmm->xsc[XTN][LOOP]) in P7ViterbiTrace()
823 else if (xmx[i][XMB] == xmx[i][XMN] + hmm->xsc[XTN][MOVE]) in P7ViterbiTrace()
1153 xmx[0][XMB] = hmm->xsc[XTN][MOVE]; /* S->N->B, no N-tail */ in P7ParsingViterbi()
1223 if ((sc = xmx[prv][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7ParsingViterbi()
1238 if ((sc = xmx[cur][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in P7ParsingViterbi()
1571 xmx[0][XMB] = hmm->xsc[XTN][MOVE]; /* S->N->B, no N-tail */ in Plan7ESTViterbi()
1579 xmx[1][XMN] = xmx[0][XMN] + hmm->xsc[XTN][LOOP]; in Plan7ESTViterbi()
1580 xmx[1][XMB] = xmx[1][XMN] + hmm->xsc[XTN][MOVE]; in Plan7ESTViterbi()
1665 xmx[i][XMN] = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]; in Plan7ESTViterbi()
1676 xmx[i][XMB] = xmx[i][XMN] + hmm->xsc[XTN][MOVE]; in Plan7ESTViterbi()
1806 if ((sc = xmx[cur][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in get_wee_midpt()
1884 if ((sc = xmx[prv][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in get_wee_midpt()
1893 if ((sc = xmx[cur][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in get_wee_midpt()
1972 if ((sc = xmx[cur][XMB] + hmm->xsc[XTN][MOVE]) > -INFTY) in get_wee_midpt()
1974 if ((sc = xmx[nxt][XMN] + hmm->xsc[XTN][LOOP]) > xmx[cur][XMN]) in get_wee_midpt()
2145 xmx[0][XMB] = hmm->xsc[XTN][MOVE]; /* S->N->B, no N-tail */ in P7ViterbiAlignAlignment()
2224 if (xmx[prv][XMN] > -INFTY && hmm->xsc[XTN][LOOP] > -INFTY && in P7ViterbiAlignAlignment()
2225 (sc = xmx[prv][XMN] + hmm->xsc[XTN][LOOP] * mocc[i]) > -INFTY) in P7ViterbiAlignAlignment()
2239 if (xmx[cur][XMN] > -INFTY && hmm->xsc[XTN][MOVE] > -INFTY && in P7ViterbiAlignAlignment()
2240 (sc = xmx[cur][XMN] + hmm->xsc[XTN][MOVE]) > xmx[cur][XMB]) in P7ViterbiAlignAlignment()