Lines Matching refs:kmerOccurence
376 KmerOccurence *kmerOccurence; in ghostThreadSequenceThroughGraph() local
438 kmerOccurence = in ghostThreadSequenceThroughGraph()
442 kmerOccurence = in ghostThreadSequenceThroughGraph()
449 kmerOccurence = in ghostThreadSequenceThroughGraph()
453 kmerOccurence = in ghostThreadSequenceThroughGraph()
460 if (kmerOccurence) { in ghostThreadSequenceThroughGraph()
462 node = getNodeInGraph(graph, kmerOccurence->nodeID); in ghostThreadSequenceThroughGraph()
464 node = getNodeInGraph(graph, -kmerOccurence->nodeID); in ghostThreadSequenceThroughGraph()
496 KmerOccurence *kmerOccurence; in threadSequenceThroughGraph() local
545 kmerOccurence = in threadSequenceThroughGraph()
549 kmerOccurence = in threadSequenceThroughGraph()
556 kmerOccurence = in threadSequenceThroughGraph()
560 kmerOccurence = in threadSequenceThroughGraph()
567 if (kmerOccurence) { in threadSequenceThroughGraph()
569 node = getNodeInGraph(graph, kmerOccurence->nodeID); in threadSequenceThroughGraph()
570 coord = kmerOccurence->position; in threadSequenceThroughGraph()
572 node = getNodeInGraph(graph, -kmerOccurence->nodeID); in threadSequenceThroughGraph()
573 coord = getNodeLength(node) - kmerOccurence->position - 1; in threadSequenceThroughGraph()