Lines Matching refs:vc
25 vrna_fold_compound_t *vc; in vrna_fold() local
29 vc = vrna_fold_compound(string, &md, 0); in vrna_fold()
30 mfe = vrna_mfe(vc, structure); in vrna_fold()
32 vrna_fold_compound_free(vc); in vrna_fold()
43 vrna_fold_compound_t *vc; in vrna_circfold() local
48 vc = vrna_fold_compound(string, &md, 0); in vrna_circfold()
49 mfe = vrna_mfe(vc, structure); in vrna_circfold()
51 vrna_fold_compound_free(vc); in vrna_circfold()
64 vrna_fold_compound_t *vc; in vrna_alifold() local
69 vc = vrna_fold_compound_comparative(strings, &md, VRNA_OPTION_DEFAULT); in vrna_alifold()
70 mfe = vrna_mfe(vc, structure); in vrna_alifold()
72 vrna_fold_compound_free(vc); in vrna_alifold()
83 vrna_fold_compound_t *vc; in vrna_circalifold() local
89 vc = vrna_fold_compound_comparative(sequences, &md, VRNA_OPTION_DEFAULT); in vrna_circalifold()
90 mfe = vrna_mfe(vc, structure); in vrna_circalifold()
92 vrna_fold_compound_free(vc); in vrna_circalifold()
104 vrna_fold_compound_t *vc; in vrna_cofold() local
111 vc = vrna_fold_compound(seq, &md, 0); in vrna_cofold()
113 mfe = vrna_mfe_dimer(vc, structure); in vrna_cofold()
115 vrna_fold_compound_free(vc); in vrna_cofold()