324   int il_a, il_b, b_a, b_b;  in main()  local
325   linear_fit(&il_a, &il_b, &b_a, &b_b);  in main()
538   int il_a, il_b, b_a, b_b;  in main()
539   linear_fit(&il_a, &il_b, &b_a, &b_b);  in main()
716 …*)access_s1, (const int **)access_s2, delta, alignment_length, deltaz, fast, il_a, il_b, b_a, b_b);  in main()
861 …  Lduplexfold(s1, s2, delta, extension_cost, alignment_length, deltaz, fast, il_a, il_b, b_a, b_b);  in main()
1064 …int **)access_s2, delta, alignment_length, deltaz, fast, structure, il_a, il_b, b_a, b_b);/* , tar…  in main()
1225 …_C(s1, s2, delta, extension_cost, alignment_length, deltaz, fast, structure, il_a, il_b, b_a, b_b);  in main()
1362 …  Lduplexfold(s1, s2, delta, extension_cost, alignment_length, deltaz, fast, il_a, il_b, b_a, b_b);  in main()
1369 …_C(s1, s2, delta, extension_cost, alignment_length, deltaz, fast, structure, il_a, il_b, b_a, b_b);  in main()
1426 …s1, (const int **)access_s2, delta, alignment_length, deltaz, fast, il_a, il_b, b_a, b_b);/* , tar…  in main()
1433 …int **)access_s2, delta, alignment_length, deltaz, fast, structure, il_a, il_b, b_a, b_b);/* , tar…  in main()
1518 … char **)AS2, n_seq * delta, extension_cost, alignment_length, deltaz, fast, il_a, il_b, b_a, b_b);  in main()
1534 …, (const int **)query_access, n_seq * delta, alignment_length, deltaz, fast, il_a, il_b, b_a, b_b);  in main()
2297            int  *il_b,  in linear_fit()  argument
2341   *il_b = (int)til_b;  in linear_fit()