Lines Matching refs:cellscore
1596 int cellscore; in read_hidden_BigDnaMatchBlock() local
1618 …max_hidden_BigDnaMatchBlock(mat,startj,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore); in read_hidden_BigDnaMatchBlock()
1665 …state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore) in max_hidden_BigDnaMatchBlock() argument
1691 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1692 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,UNMATCHED_TARGET); in max_hidden_BigDnaMatchBlock()
1702 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1703 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH55); in max_hidden_BigDnaMatchBlock()
1713 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1714 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,MATCH55); in max_hidden_BigDnaMatchBlock()
1724 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1725 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,MATCH55); in max_hidden_BigDnaMatchBlock()
1738 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1739 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,UNMATCHED_TARGET); in max_hidden_BigDnaMatchBlock()
1749 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1750 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH65); in max_hidden_BigDnaMatchBlock()
1760 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1761 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,MATCH65); in max_hidden_BigDnaMatchBlock()
1771 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1772 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,MATCH65); in max_hidden_BigDnaMatchBlock()
1785 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1786 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,UNMATCHED_TARGET); in max_hidden_BigDnaMatchBlock()
1796 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1797 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH75); in max_hidden_BigDnaMatchBlock()
1807 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1808 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,MATCH75); in max_hidden_BigDnaMatchBlock()
1818 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1819 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,MATCH75); in max_hidden_BigDnaMatchBlock()
1832 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1833 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,UNMATCHED_TARGET); in max_hidden_BigDnaMatchBlock()
1843 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1844 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH85); in max_hidden_BigDnaMatchBlock()
1854 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1855 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,MATCH85); in max_hidden_BigDnaMatchBlock()
1865 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1866 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,MATCH85); in max_hidden_BigDnaMatchBlock()
1879 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1880 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,UNMATCHED_TARGET); in max_hidden_BigDnaMatchBlock()
1890 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1891 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH95); in max_hidden_BigDnaMatchBlock()
1901 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1902 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,MATCH95); in max_hidden_BigDnaMatchBlock()
1912 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1913 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-1,MATCH95); in max_hidden_BigDnaMatchBlock()
1927 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1928 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,UNMATCHED_QUERY); in max_hidden_BigDnaMatchBlock()
1938 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1939 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH95); in max_hidden_BigDnaMatchBlock()
1949 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1950 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH85); in max_hidden_BigDnaMatchBlock()
1960 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1961 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH75); in max_hidden_BigDnaMatchBlock()
1971 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1972 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH65); in max_hidden_BigDnaMatchBlock()
1982 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1983 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-1,j-0,MATCH55); in max_hidden_BigDnaMatchBlock()
1996 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1997 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,UNMATCHED_TARGET); in max_hidden_BigDnaMatchBlock()
2007 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
2008 *cellscore = cscore - BigDnaMatchBlock_HIDDEN_MATRIX(mat,i-0,j-1,UNMATCHED_QUERY); in max_hidden_BigDnaMatchBlock()
2041 int cellscore; in read_special_strip_BigDnaMatchBlock() local
2067 …max_special_strip_BigDnaMatchBlock(mat,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore); in read_special_strip_BigDnaMatchBlock()
2116 …state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore) in max_special_strip_BigDnaMatchBlock() argument
2165 … j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore) in max_matrix_to_special_BigDnaMatchBlock() argument
2220 if( cellscore != NULL) { in max_matrix_to_special_BigDnaMatchBlock()
2221 *cellscore = cscore - BigDnaMatchBlock_DC_SHADOW_SPECIAL(mat,i-1,j-0,START); in max_matrix_to_special_BigDnaMatchBlock()
4668 int cellscore = (-1); in PackAln_read_generic_BigDnaMatchBlock() local
4705 …max_calc_special_BigDnaMatchBlock(mat,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore,h); … in PackAln_read_generic_BigDnaMatchBlock()
4707 … max_calc_BigDnaMatchBlock(mat,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore,h); in PackAln_read_generic_BigDnaMatchBlock()
4724 prev->score = cellscore; in PackAln_read_generic_BigDnaMatchBlock()
4835 …special,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore,BigDnaMatchBlock… in max_calc_BigDnaMatchBlock() argument
4861 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4862 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,UNMATCHED_TARGET); in max_calc_BigDnaMatchBlock()
4872 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4873 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH55); in max_calc_BigDnaMatchBlock()
4883 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4884 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,MATCH55); in max_calc_BigDnaMatchBlock()
4894 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4895 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,MATCH55); in max_calc_BigDnaMatchBlock()
4908 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4909 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,UNMATCHED_TARGET); in max_calc_BigDnaMatchBlock()
4919 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4920 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH65); in max_calc_BigDnaMatchBlock()
4930 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4931 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,MATCH65); in max_calc_BigDnaMatchBlock()
4941 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4942 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,MATCH65); in max_calc_BigDnaMatchBlock()
4955 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4956 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,UNMATCHED_TARGET); in max_calc_BigDnaMatchBlock()
4966 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4967 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH75); in max_calc_BigDnaMatchBlock()
4977 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4978 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,MATCH75); in max_calc_BigDnaMatchBlock()
4988 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
4989 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,MATCH75); in max_calc_BigDnaMatchBlock()
5002 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5003 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,UNMATCHED_TARGET); in max_calc_BigDnaMatchBlock()
5013 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5014 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH85); in max_calc_BigDnaMatchBlock()
5024 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5025 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,MATCH85); in max_calc_BigDnaMatchBlock()
5035 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5036 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,MATCH85); in max_calc_BigDnaMatchBlock()
5049 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5050 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,UNMATCHED_TARGET); in max_calc_BigDnaMatchBlock()
5060 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5061 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH95); in max_calc_BigDnaMatchBlock()
5071 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5072 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,MATCH95); in max_calc_BigDnaMatchBlock()
5082 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5083 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,MATCH95); in max_calc_BigDnaMatchBlock()
5098 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5099 *cellscore = cscore - (*h.access_special)(mat,i-1,j-0,START); in max_calc_BigDnaMatchBlock()
5110 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5111 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,UNMATCHED_QUERY); in max_calc_BigDnaMatchBlock()
5121 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5122 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH95); in max_calc_BigDnaMatchBlock()
5132 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5133 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH85); in max_calc_BigDnaMatchBlock()
5143 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5144 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH75); in max_calc_BigDnaMatchBlock()
5154 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5155 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH65); in max_calc_BigDnaMatchBlock()
5165 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5166 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH55); in max_calc_BigDnaMatchBlock()
5179 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5180 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,UNMATCHED_TARGET); in max_calc_BigDnaMatchBlock()
5190 if( cellscore != NULL) { in max_calc_BigDnaMatchBlock()
5191 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,UNMATCHED_QUERY); in max_calc_BigDnaMatchBlock()
5223 …special,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore,BigDnaMatchBlock… in max_calc_special_BigDnaMatchBlock() argument
5250 if( cellscore != NULL) { in max_calc_special_BigDnaMatchBlock()
5251 *cellscore = cscore - (*h.access_main)(mat,i-0,j-0,UNMATCHED_TARGET); in max_calc_special_BigDnaMatchBlock()