Lines Matching refs:cellscore
1875 int cellscore; in read_hidden_GeneWise6() local
1897 max_hidden_GeneWise6(mat,startj,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore); in read_hidden_GeneWise6()
1944 …state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore) in max_hidden_GeneWise6() argument
1970 if( cellscore != NULL) { in max_hidden_GeneWise6()
1971 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-5,MATCH); in max_hidden_GeneWise6()
1981 if( cellscore != NULL) { in max_hidden_GeneWise6()
1982 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-4,MATCH); in max_hidden_GeneWise6()
1992 if( cellscore != NULL) { in max_hidden_GeneWise6()
1993 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-1,MATCH); in max_hidden_GeneWise6()
2003 if( cellscore != NULL) { in max_hidden_GeneWise6()
2004 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-2,MATCH); in max_hidden_GeneWise6()
2014 if( cellscore != NULL) { in max_hidden_GeneWise6()
2015 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-4,INTRON_2); in max_hidden_GeneWise6()
2025 if( cellscore != NULL) { in max_hidden_GeneWise6()
2026 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-5,INTRON_1); in max_hidden_GeneWise6()
2036 if( cellscore != NULL) { in max_hidden_GeneWise6()
2037 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-6,INTRON_0); in max_hidden_GeneWise6()
2048 if( cellscore != NULL) { in max_hidden_GeneWise6()
2049 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-3,DELETE); in max_hidden_GeneWise6()
2059 if( cellscore != NULL) { in max_hidden_GeneWise6()
2060 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-3,INSERT); in max_hidden_GeneWise6()
2070 if( cellscore != NULL) { in max_hidden_GeneWise6()
2071 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-3,MATCH); in max_hidden_GeneWise6()
2084 if( cellscore != NULL) { in max_hidden_GeneWise6()
2085 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-1,INSERT); in max_hidden_GeneWise6()
2095 if( cellscore != NULL) { in max_hidden_GeneWise6()
2096 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-2,INSERT); in max_hidden_GeneWise6()
2106 if( cellscore != NULL) { in max_hidden_GeneWise6()
2107 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-4,INTRON_2); in max_hidden_GeneWise6()
2117 if( cellscore != NULL) { in max_hidden_GeneWise6()
2118 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-5,INTRON_1); in max_hidden_GeneWise6()
2128 if( cellscore != NULL) { in max_hidden_GeneWise6()
2129 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-6,INTRON_0); in max_hidden_GeneWise6()
2140 if( cellscore != NULL) { in max_hidden_GeneWise6()
2141 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-3,DELETE); in max_hidden_GeneWise6()
2151 if( cellscore != NULL) { in max_hidden_GeneWise6()
2152 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-3,INSERT); in max_hidden_GeneWise6()
2162 if( cellscore != NULL) { in max_hidden_GeneWise6()
2163 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-3,MATCH); in max_hidden_GeneWise6()
2177 if( cellscore != NULL) { in max_hidden_GeneWise6()
2178 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-0,DELETE); in max_hidden_GeneWise6()
2188 if( cellscore != NULL) { in max_hidden_GeneWise6()
2189 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-0,INSERT); in max_hidden_GeneWise6()
2199 if( cellscore != NULL) { in max_hidden_GeneWise6()
2200 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-1,j-0,MATCH); in max_hidden_GeneWise6()
2213 if( cellscore != NULL) { in max_hidden_GeneWise6()
2214 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-1,INTRON_0); in max_hidden_GeneWise6()
2224 if( cellscore != NULL) { in max_hidden_GeneWise6()
2225 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-8,INSERT); in max_hidden_GeneWise6()
2235 if( cellscore != NULL) { in max_hidden_GeneWise6()
2236 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-8,MATCH); in max_hidden_GeneWise6()
2249 if( cellscore != NULL) { in max_hidden_GeneWise6()
2250 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-1,INTRON_1); in max_hidden_GeneWise6()
2260 if( cellscore != NULL) { in max_hidden_GeneWise6()
2261 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-9,INSERT); in max_hidden_GeneWise6()
2271 if( cellscore != NULL) { in max_hidden_GeneWise6()
2272 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-9,MATCH); in max_hidden_GeneWise6()
2285 if( cellscore != NULL) { in max_hidden_GeneWise6()
2286 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-1,INTRON_2); in max_hidden_GeneWise6()
2296 if( cellscore != NULL) { in max_hidden_GeneWise6()
2297 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-10,INSERT); in max_hidden_GeneWise6()
2307 if( cellscore != NULL) { in max_hidden_GeneWise6()
2308 *cellscore = cscore - GeneWise6_HIDDEN_MATRIX(mat,i-0,j-10,MATCH); in max_hidden_GeneWise6()
2341 int cellscore; in read_special_strip_GeneWise6() local
2367 max_special_strip_GeneWise6(mat,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore); in read_special_strip_GeneWise6()
2416 …state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore) in max_special_strip_GeneWise6() argument
2467 … j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore) in max_matrix_to_special_GeneWise6() argument
2494 if( cellscore != NULL) { in max_matrix_to_special_GeneWise6()
2495 *cellscore = cscore - GeneWise6_DC_SHADOW_SPECIAL(mat,i-1,j-3,START); in max_matrix_to_special_GeneWise6()
2516 if( cellscore != NULL) { in max_matrix_to_special_GeneWise6()
2517 *cellscore = cscore - GeneWise6_DC_SHADOW_SPECIAL(mat,i-0,j-3,START); in max_matrix_to_special_GeneWise6()
2533 if( cellscore != NULL) { in max_matrix_to_special_GeneWise6()
2534 *cellscore = cscore - GeneWise6_DC_SHADOW_SPECIAL(mat,i-1,j-0,START); in max_matrix_to_special_GeneWise6()
5152 int cellscore = (-1); in PackAln_read_generic_GeneWise6() local
5189 … max_calc_special_GeneWise6(mat,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore,h); in PackAln_read_generic_GeneWise6()
5191 max_calc_GeneWise6(mat,i,j,state,isspecial,&i,&j,&state,&isspecial,&cellscore,h); in PackAln_read_generic_GeneWise6()
5208 prev->score = cellscore; in PackAln_read_generic_GeneWise6()
5318 …special,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore,GeneWise6_access… in max_calc_GeneWise6() argument
5344 if( cellscore != NULL) { in max_calc_GeneWise6()
5345 *cellscore = cscore - (*h.access_main)(mat,i-1,j-5,MATCH); in max_calc_GeneWise6()
5355 if( cellscore != NULL) { in max_calc_GeneWise6()
5356 *cellscore = cscore - (*h.access_main)(mat,i-1,j-4,MATCH); in max_calc_GeneWise6()
5366 if( cellscore != NULL) { in max_calc_GeneWise6()
5367 *cellscore = cscore - (*h.access_main)(mat,i-1,j-1,MATCH); in max_calc_GeneWise6()
5377 if( cellscore != NULL) { in max_calc_GeneWise6()
5378 *cellscore = cscore - (*h.access_main)(mat,i-1,j-2,MATCH); in max_calc_GeneWise6()
5388 if( cellscore != NULL) { in max_calc_GeneWise6()
5389 *cellscore = cscore - (*h.access_main)(mat,i-1,j-4,INTRON_2); in max_calc_GeneWise6()
5399 if( cellscore != NULL) { in max_calc_GeneWise6()
5400 *cellscore = cscore - (*h.access_main)(mat,i-1,j-5,INTRON_1); in max_calc_GeneWise6()
5410 if( cellscore != NULL) { in max_calc_GeneWise6()
5411 *cellscore = cscore - (*h.access_main)(mat,i-1,j-6,INTRON_0); in max_calc_GeneWise6()
5421 if( cellscore != NULL) { in max_calc_GeneWise6()
5422 *cellscore = cscore - (*h.access_special)(mat,i-1,j-3,START); in max_calc_GeneWise6()
5432 if( cellscore != NULL) { in max_calc_GeneWise6()
5433 *cellscore = cscore - (*h.access_main)(mat,i-1,j-3,DELETE); in max_calc_GeneWise6()
5443 if( cellscore != NULL) { in max_calc_GeneWise6()
5444 *cellscore = cscore - (*h.access_main)(mat,i-1,j-3,INSERT); in max_calc_GeneWise6()
5454 if( cellscore != NULL) { in max_calc_GeneWise6()
5455 *cellscore = cscore - (*h.access_main)(mat,i-1,j-3,MATCH); in max_calc_GeneWise6()
5468 if( cellscore != NULL) { in max_calc_GeneWise6()
5469 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,INSERT); in max_calc_GeneWise6()
5479 if( cellscore != NULL) { in max_calc_GeneWise6()
5480 *cellscore = cscore - (*h.access_main)(mat,i-0,j-2,INSERT); in max_calc_GeneWise6()
5490 if( cellscore != NULL) { in max_calc_GeneWise6()
5491 *cellscore = cscore - (*h.access_main)(mat,i-0,j-4,INTRON_2); in max_calc_GeneWise6()
5501 if( cellscore != NULL) { in max_calc_GeneWise6()
5502 *cellscore = cscore - (*h.access_main)(mat,i-0,j-5,INTRON_1); in max_calc_GeneWise6()
5512 if( cellscore != NULL) { in max_calc_GeneWise6()
5513 *cellscore = cscore - (*h.access_main)(mat,i-0,j-6,INTRON_0); in max_calc_GeneWise6()
5523 if( cellscore != NULL) { in max_calc_GeneWise6()
5524 *cellscore = cscore - (*h.access_special)(mat,i-0,j-3,START); in max_calc_GeneWise6()
5534 if( cellscore != NULL) { in max_calc_GeneWise6()
5535 *cellscore = cscore - (*h.access_main)(mat,i-0,j-3,DELETE); in max_calc_GeneWise6()
5545 if( cellscore != NULL) { in max_calc_GeneWise6()
5546 *cellscore = cscore - (*h.access_main)(mat,i-0,j-3,INSERT); in max_calc_GeneWise6()
5556 if( cellscore != NULL) { in max_calc_GeneWise6()
5557 *cellscore = cscore - (*h.access_main)(mat,i-0,j-3,MATCH); in max_calc_GeneWise6()
5570 if( cellscore != NULL) { in max_calc_GeneWise6()
5571 *cellscore = cscore - (*h.access_special)(mat,i-1,j-0,START); in max_calc_GeneWise6()
5581 if( cellscore != NULL) { in max_calc_GeneWise6()
5582 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,DELETE); in max_calc_GeneWise6()
5592 if( cellscore != NULL) { in max_calc_GeneWise6()
5593 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,INSERT); in max_calc_GeneWise6()
5603 if( cellscore != NULL) { in max_calc_GeneWise6()
5604 *cellscore = cscore - (*h.access_main)(mat,i-1,j-0,MATCH); in max_calc_GeneWise6()
5617 if( cellscore != NULL) { in max_calc_GeneWise6()
5618 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,INTRON_0); in max_calc_GeneWise6()
5628 if( cellscore != NULL) { in max_calc_GeneWise6()
5629 *cellscore = cscore - (*h.access_main)(mat,i-0,j-8,INSERT); in max_calc_GeneWise6()
5639 if( cellscore != NULL) { in max_calc_GeneWise6()
5640 *cellscore = cscore - (*h.access_main)(mat,i-0,j-8,MATCH); in max_calc_GeneWise6()
5653 if( cellscore != NULL) { in max_calc_GeneWise6()
5654 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,INTRON_1); in max_calc_GeneWise6()
5664 if( cellscore != NULL) { in max_calc_GeneWise6()
5665 *cellscore = cscore - (*h.access_main)(mat,i-0,j-9,INSERT); in max_calc_GeneWise6()
5675 if( cellscore != NULL) { in max_calc_GeneWise6()
5676 *cellscore = cscore - (*h.access_main)(mat,i-0,j-9,MATCH); in max_calc_GeneWise6()
5689 if( cellscore != NULL) { in max_calc_GeneWise6()
5690 *cellscore = cscore - (*h.access_main)(mat,i-0,j-1,INTRON_2); in max_calc_GeneWise6()
5700 if( cellscore != NULL) { in max_calc_GeneWise6()
5701 *cellscore = cscore - (*h.access_main)(mat,i-0,j-10,INSERT); in max_calc_GeneWise6()
5711 if( cellscore != NULL) { in max_calc_GeneWise6()
5712 *cellscore = cscore - (*h.access_main)(mat,i-0,j-10,MATCH); in max_calc_GeneWise6()
5744 …special,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore,GeneWise6_access… in max_calc_special_GeneWise6() argument
5771 if( cellscore != NULL) { in max_calc_special_GeneWise6()
5772 *cellscore = cscore - (*h.access_main)(mat,i-0,j-0,DELETE); in max_calc_special_GeneWise6()
5785 if( cellscore != NULL) { in max_calc_special_GeneWise6()
5786 *cellscore = cscore - (*h.access_main)(mat,i-0,j-0,INSERT); in max_calc_special_GeneWise6()
5799 if( cellscore != NULL) { in max_calc_special_GeneWise6()
5800 *cellscore = cscore - (*h.access_main)(mat,i-0,j-0,MATCH); in max_calc_special_GeneWise6()