Lines Matching refs:RND_SEQ
28 #define RND_SEQ 0 macro
245 StatWise10_VSMALL_SPECIAL(mat,i,j,RND_SEQ) = NEGI; in score_only_StatWise10()
266 …temp = StatWise10_VSMALL_SPECIAL(mat,i-1,j-3,RND_SEQ) + (mat->codon->codon[CSEQ_GENOMIC_CODON(mat-… in score_only_StatWise10()
300 if( temp > StatWise10_VSMALL_SPECIAL(mat,i,j,RND_SEQ) ) { in score_only_StatWise10()
301 StatWise10_VSMALL_SPECIAL(mat,i,j,RND_SEQ) = temp; in score_only_StatWise10()
369 score = StatWise10_VSMALL_SPECIAL(mat,0,j,RND_SEQ); in score_only_StatWise10()
374 temp = StatWise10_VSMALL_SPECIAL(mat,0,j - 1,RND_SEQ) + (0) + (0); in score_only_StatWise10()
386 StatWise10_VSMALL_SPECIAL(mat,0,j,RND_SEQ) = score; in score_only_StatWise10()
401 temp = StatWise10_VSMALL_SPECIAL(mat,0,j - 1,RND_SEQ) + (0) + (0); in score_only_StatWise10()
603 StatWise10_EXPL_SPECIAL(mat,i,j,RND_SEQ) = NEGI; in init_StatWise10()
640 if( offj == 3 && prev->state == (RND_SEQ+4) ) { in recalculate_PackAln_StatWise10()
695 case (RND_SEQ+4) : in recalculate_PackAln_StatWise10()
702 if( offj == 1 && prev->state == (RND_SEQ+4) ) { in recalculate_PackAln_StatWise10()
716 if( offj == 1 && prev->state == (RND_SEQ+4) ) { in recalculate_PackAln_StatWise10()
1389 case RND_SEQ : in max_special_strip_StatWise10()
1404 if( temp == StatWise10_DC_SHADOW_SPECIAL(mat,i - 0,j - 1,RND_SEQ) ) { in max_special_strip_StatWise10()
1407 *retstate = RND_SEQ; in max_special_strip_StatWise10()
1410 *cellscore = cscore - StatWise10_DC_SHADOW_SPECIAL(mat,i-0,j-1,RND_SEQ); in max_special_strip_StatWise10()
1412 return StatWise10_DC_SHADOW_MATRIX(mat,i - 0,j - 1,RND_SEQ) ; in max_special_strip_StatWise10()
1419 if( temp == StatWise10_DC_SHADOW_SPECIAL(mat,i - 0,j - 1,RND_SEQ) ) { in max_special_strip_StatWise10()
1422 *retstate = RND_SEQ; in max_special_strip_StatWise10()
1425 *cellscore = cscore - StatWise10_DC_SHADOW_SPECIAL(mat,i-0,j-1,RND_SEQ); in max_special_strip_StatWise10()
1427 return StatWise10_DC_SHADOW_MATRIX(mat,i - 0,j - 1,RND_SEQ) ; in max_special_strip_StatWise10()
1473 if( temp == StatWise10_DC_SHADOW_SPECIAL(mat,i - 1,j - 3,RND_SEQ) ) { in max_matrix_to_special_StatWise10()
1476 *retstate = RND_SEQ; in max_matrix_to_special_StatWise10()
1479 *cellscore = cscore - StatWise10_DC_SHADOW_SPECIAL(mat,i-1,j-3,RND_SEQ); in max_matrix_to_special_StatWise10()
1481 return StatWise10_DC_SHADOW_MATRIX(mat,i - 1,j - 3,RND_SEQ) ; in max_matrix_to_special_StatWise10()
2454 …temp = StatWise10_DC_SHADOW_SPECIAL(mat,i-1,j-3,RND_SEQ) + (mat->codon->codon[CSEQ_GENOMIC_CODON(m… in dc_start_end_calculate_StatWise10()
2507 if( temp > StatWise10_DC_SHADOW_SPECIAL(mat,i,j,RND_SEQ) ) { in dc_start_end_calculate_StatWise10()
2508 StatWise10_DC_SHADOW_SPECIAL(mat,i,j,RND_SEQ) = temp; in dc_start_end_calculate_StatWise10()
2511 …StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,k) = StatWise10_DC_SHADOW_MATRIX_SP(mat,i,j,CODON,… in dc_start_end_calculate_StatWise10()
2512 …StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,6) = StatWise10_DC_SHADOW_MATRIX_SP(mat,i,j,CODON,… in dc_start_end_calculate_StatWise10()
2513 StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,3) = i; in dc_start_end_calculate_StatWise10()
2514 StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,4) = j; in dc_start_end_calculate_StatWise10()
2515 StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,5) = CODON; in dc_start_end_calculate_StatWise10()
2610 score = StatWise10_DC_SHADOW_SPECIAL(mat,0,j,RND_SEQ); in dc_start_end_calculate_StatWise10()
2615 temp = StatWise10_DC_SHADOW_SPECIAL(mat,0,j - 1,RND_SEQ) + (0) + (0); in dc_start_end_calculate_StatWise10()
2620 …StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,k) = StatWise10_DC_SHADOW_SPECIAL_SP(mat,i - 0,j -… in dc_start_end_calculate_StatWise10()
2630 …StatWise10_DC_SHADOW_SPECIAL_SP(mat,i,j,RND_SEQ,k) = StatWise10_DC_SHADOW_SPECIAL_SP(mat,i - 0,j -… in dc_start_end_calculate_StatWise10()
2635 StatWise10_DC_SHADOW_SPECIAL(mat,0,j,RND_SEQ) = score; in dc_start_end_calculate_StatWise10()
2650 temp = StatWise10_DC_SHADOW_SPECIAL(mat,0,j - 1,RND_SEQ) + (0) + (0); in dc_start_end_calculate_StatWise10()
2655 …C_SHADOW_SPECIAL_SP(mat,i,j,END,k) = StatWise10_DC_SHADOW_SPECIAL_SP(mat,i - 0,j - 1,RND_SEQ,k); in dc_start_end_calculate_StatWise10()
2731 StatWise10_DC_SHADOW_SPECIAL(mat,0,j,RND_SEQ) = NEGI; in init_start_end_linear_StatWise10()
2732 StatWise10_DC_SHADOW_SPECIAL_SP(mat,0,j,RND_SEQ,0) = (-1); in init_start_end_linear_StatWise10()
2797 acu->state1 = RND_SEQ + 4; in AlnConvertSet_StatWise10()
2887 acu->state2 = RND_SEQ + 4; in AlnConvertSet_StatWise10()
2894 acu->state1 = RND_SEQ + 4; in AlnConvertSet_StatWise10()
2895 acu->state2 = RND_SEQ + 4; in AlnConvertSet_StatWise10()
2903 acu->state2 = RND_SEQ + 4; in AlnConvertSet_StatWise10()
2910 acu->state1 = RND_SEQ + 4; in AlnConvertSet_StatWise10()
3168 if( temp == StatWise10_EXPL_SPECIAL(mat,i - 1,j - 3,RND_SEQ) ) { in max_calc_StatWise10()
3171 *retstate = RND_SEQ; in max_calc_StatWise10()
3174 *cellscore = cscore - StatWise10_EXPL_SPECIAL(mat,i-1,j-3,RND_SEQ); in max_calc_StatWise10()
3176 return StatWise10_EXPL_MATRIX(mat,i - 1,j - 3,RND_SEQ); in max_calc_StatWise10()
3309 case RND_SEQ : in max_calc_special_StatWise10()
3324 if( temp == StatWise10_EXPL_SPECIAL(mat,i - 0,j - 1,RND_SEQ) ) { in max_calc_special_StatWise10()
3327 *retstate = RND_SEQ; in max_calc_special_StatWise10()
3330 *cellscore = cscore - StatWise10_EXPL_SPECIAL(mat,i-0,j-1,RND_SEQ); in max_calc_special_StatWise10()
3332 return StatWise10_EXPL_MATRIX(mat,i - 0,j - 1,RND_SEQ) ; in max_calc_special_StatWise10()
3352 if( temp == StatWise10_EXPL_SPECIAL(mat,i - 0,j - 1,RND_SEQ) ) { in max_calc_special_StatWise10()
3355 *retstate = RND_SEQ; in max_calc_special_StatWise10()
3358 *cellscore = cscore - StatWise10_EXPL_SPECIAL(mat,i-0,j-1,RND_SEQ); in max_calc_special_StatWise10()
3360 return StatWise10_EXPL_MATRIX(mat,i - 0,j - 1,RND_SEQ) ; in max_calc_special_StatWise10()
3418 …temp = StatWise10_EXPL_SPECIAL(mat,i-1,j-3,RND_SEQ) + (mat->codon->codon[CSEQ_GENOMIC_CODON(mat->s… in calculate_StatWise10()
3452 if( temp > StatWise10_EXPL_SPECIAL(mat,i,j,RND_SEQ) ) { in calculate_StatWise10()
3453 StatWise10_EXPL_SPECIAL(mat,i,j,RND_SEQ) = temp; in calculate_StatWise10()
3519 score = StatWise10_EXPL_SPECIAL(mat,0,j,RND_SEQ); in calculate_StatWise10()
3524 temp = StatWise10_EXPL_SPECIAL(mat,0,j - 1,RND_SEQ) + (0) + (0); in calculate_StatWise10()
3536 StatWise10_EXPL_SPECIAL(mat,0,j,RND_SEQ) = score; in calculate_StatWise10()
3551 temp = StatWise10_EXPL_SPECIAL(mat,0,j - 1,RND_SEQ) + (0) + (0); in calculate_StatWise10()