Lines Matching defs:dpenv

117 boolean calculate_shatter_ThreeStateProtein(ThreeStateProtein * mat,DPEnvelope * dpenv)   in calculate_shatter_ThreeStateProtein()
706 …_ThreeStateProtein(ThreeStateScore* query,ComplexSequence* target ,DPEnvelope * dpenv,DPRunImpl * …  in PackAln_bestmemory_ThreeStateProtein()
1065 PackAln * PackAln_calculate_Small_ThreeStateProtein(ThreeStateProtein * mat,DPEnvelope * dpenv)   in PackAln_calculate_Small_ThreeStateProtein()
1740 …n * mat,int starti,int startj,int startstate,int stopi,int stopj,int stopstate,DPEnvelope * dpenv)   in calculate_hidden_ThreeStateProtein()
1905 …rtstate,int stopi,int stopj,int stopstate,PackAln * out,int * donej,int totalj,DPEnvelope * dpenv)   in full_dc_ThreeStateProtein()
1983 …starti,int startj,int startstate,int stopi,int stopj,int stopstate,DPEnvelope * dpenv,int perc_don…  in do_dc_single_pass_ThreeStateProtein()
2012 …ateProtein(ThreeStateProtein * mat,int starti,int stopi,int startj,int * stopj,DPEnvelope * dpenv)   in push_dc_at_merge_ThreeStateProtein()
2243 …(ThreeStateProtein * mat,int starti,int stopi,int startj,int stopj,DPEnvelope * dpenv,int perc_don…  in follow_on_dc_ThreeStateProtein()
2383 …(ThreeStateProtein * mat,int starti,int stopi,int startj,int stopj,DPEnvelope * dpenv,int perc_don…  in run_up_dc_ThreeStateProtein()
2562 boolean dc_optimised_start_end_calc_ThreeStateProtein(ThreeStateProtein *mat,DPEnvelope * dpenv)   in dc_optimised_start_end_calc_ThreeStateProtein()
3672 boolean calculate_dpenv_ThreeStateProtein(ThreeStateProtein * mat,DPEnvelope * dpenv)   in calculate_dpenv_ThreeStateProtein()