Searched defs:DEFAULT_QUERY_LOOKAHEAD_BASES (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/ |
| H A D | MultiVariantDataSourceUnitTest.java | 52 FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testQueryOverUnindexedFile()
63 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testGetName()
69 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testGetName()
86 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testGetSequenceDictionaryCompatible()
99 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testGetSequenceDictionaryAlternate()
111 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testGetSequenceDictionaryIncompatible()
154 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testIteratorOverlapping()
174 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testSerialQueries()
204 … new MultiVariantDataSource(featureInputs, FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES)) { in testSetIntervals()
234 …vcfFile.getAbsolutePath(), vcfFile.getName())), FeatureDataSource.DEFAULT_QUERY_LOOKAHEAD_BASES) )… in testCompleteIterationOverFile()
[all …]
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/spark/ |
| H A D | JoinReadsWithVariants.java | 30 private static final int DEFAULT_QUERY_LOOKAHEAD_BASES = 100000; field in JoinReadsWithVariants
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/ |
| H A D | FeatureDataSource.java | 137 public static final int DEFAULT_QUERY_LOOKAHEAD_BASES = 1000; field in FeatureDataSource
|