| .. | | 19-Feb-2021 | - |
| filters/ | H | 19-Feb-2021 | - | 2,202 | 1,387 |
| spark/ | H | 19-Feb-2021 | - | 4,445 | 2,715 |
| AbstractConcordanceWalker.java | H A D | 19-Feb-2021 | 13.1 KiB | 285 | 187 |
| ActivityProfileStateIterator.java | H A D | 19-Feb-2021 | 4.3 KiB | 91 | 56 |
| AlignmentContext.java | H A D | 19-Feb-2021 | 5.1 KiB | 142 | 90 |
| AssemblyRegion.java | H A D | 19-Feb-2021 | 16 KiB | 361 | 156 |
| AssemblyRegionEvaluator.java | H A D | 19-Feb-2021 | 986 | 23 | 6 |
| AssemblyRegionFromActivityProfileStateIterator.java | H A D | 19-Feb-2021 | 6.8 KiB | 138 | 86 |
| AssemblyRegionIterator.java | H A D | 19-Feb-2021 | 10.6 KiB | 217 | 134 |
| AssemblyRegionWalker.java | H A D | 19-Feb-2021 | 11.7 KiB | 252 | 117 |
| BasicReference.java | H A D | 19-Feb-2021 | 488 | 16 | 5 |
| DoNotSubclass.java | H A D | 19-Feb-2021 | 391 | 14 | 7 |
| DuplicateSetWalker.java | H A D | 19-Feb-2021 | 7.5 KiB | 154 | 87 |
| FeatureCache.java | H A D | 19-Feb-2021 | 9.9 KiB | 250 | 94 |
| FeatureContext.java | H A D | 19-Feb-2021 | 17.6 KiB | 332 | 98 |
| FeatureDataSource.java | H A D | 19-Feb-2021 | 33.9 KiB | 624 | 280 |
| FeatureInput.java | H A D | 19-Feb-2021 | 9 KiB | 240 | 93 |
| FeatureIntervalIterator.java | H A D | 19-Feb-2021 | 5.8 KiB | 155 | 88 |
| FeatureManager.java | H A D | 19-Feb-2021 | 28.9 KiB | 532 | 211 |
| FeatureWalker.java | H A D | 19-Feb-2021 | 7 KiB | 160 | 72 |
| GATKDataSource.java | H A D | 19-Feb-2021 | 458 | 16 | 6 |
| GATKPath.java | H A D | 19-Feb-2021 | 6.8 KiB | 206 | 146 |
| GATKTool.java | H A D | 19-Feb-2021 | 50.6 KiB | 1,083 | 481 |
| IntervalWalker.java | H A D | 19-Feb-2021 | 5 KiB | 109 | 39 |
| LocusWalker.java | H A D | 19-Feb-2021 | 10.5 KiB | 221 | 98 |
| LocusWalkerByInterval.java | H A D | 19-Feb-2021 | 6.9 KiB | 128 | 54 |
| MultiIntervalLocalReadShard.java | H A D | 19-Feb-2021 | 6.4 KiB | 156 | 70 |
| MultiIntervalShard.java | H A D | 19-Feb-2021 | 598 | 24 | 7 |
| MultiVariantDataSource.java | H A D | 19-Feb-2021 | 20.4 KiB | 420 | 231 |
| MultiVariantWalker.java | H A D | 19-Feb-2021 | 9 KiB | 189 | 89 |
| MultiVariantWalkerGroupedOnStart.java | H A D | 19-Feb-2021 | 8.7 KiB | 195 | 103 |
| MultiplePassReadWalker.java | H A D | 19-Feb-2021 | 3.9 KiB | 84 | 42 |
| MultiplePassVariantWalker.java | H A D | 19-Feb-2021 | 4.3 KiB | 96 | 48 |
| ProgressMeter.java | H A D | 19-Feb-2021 | 12.8 KiB | 345 | 136 |
| ReadContextData.java | H A D | 19-Feb-2021 | 2.2 KiB | 71 | 52 |
| ReadWalker.java | H A D | 19-Feb-2021 | 7.8 KiB | 171 | 65 |
| ReadlessAssemblyRegion.java | H A D | 19-Feb-2021 | 1.8 KiB | 59 | 43 |
| ReadsContext.java | H A D | 19-Feb-2021 | 4.7 KiB | 122 | 44 |
| ReadsDataSource.java | H A D | 19-Feb-2021 | 3.8 KiB | 102 | 26 |
| ReadsDataSourcePool.java | H A D | 19-Feb-2021 | 2.7 KiB | 88 | 65 |
| ReadsPathDataSource.java | H A D | 19-Feb-2021 | 23.6 KiB | 543 | 274 |
| ReferenceContext.java | H A D | 19-Feb-2021 | 18.2 KiB | 434 | 166 |
| ReferenceDataSource.java | H A D | 19-Feb-2021 | 4.4 KiB | 108 | 31 |
| ReferenceFileSource.java | H A D | 19-Feb-2021 | 3.6 KiB | 100 | 32 |
| ReferenceMemorySource.java | H A D | 19-Feb-2021 | 4.9 KiB | 121 | 55 |
| ReferenceShard.java | H A D | 19-Feb-2021 | 2.2 KiB | 72 | 44 |
| ReferenceWalker.java | H A D | 19-Feb-2021 | 5.4 KiB | 113 | 38 |
| Shard.java | H A D | 19-Feb-2021 | 4.5 KiB | 104 | 46 |
| ShardBoundary.java | H A D | 19-Feb-2021 | 3.1 KiB | 114 | 73 |
| ShardBoundaryShard.java | H A D | 19-Feb-2021 | 1.3 KiB | 46 | 28 |
| ShardToMultiIntervalShardAdapter.java | H A D | 19-Feb-2021 | 1.4 KiB | 51 | 36 |
| TraversalParameters.java | H A D | 19-Feb-2021 | 1.5 KiB | 44 | 20 |
| TwoPassVariantWalker.java | H A D | 19-Feb-2021 | 1.8 KiB | 45 | 32 |
| VariantLocusWalker.java | H A D | 19-Feb-2021 | 11.7 KiB | 221 | 114 |
| VariantShard.java | H A D | 19-Feb-2021 | 2.7 KiB | 80 | 53 |
| VariantWalker.java | H A D | 19-Feb-2021 | 7.1 KiB | 147 | 65 |
| VariantWalkerBase.java | H A D | 19-Feb-2021 | 9.3 KiB | 205 | 83 |
| WalkerBase.java | H A D | 19-Feb-2021 | 3.9 KiB | 69 | 19 |