| /dports/biology/gffread/gffread-0.12.7/gclib/ |
| H A D | GBase.h | 377 struct GSeg { struct
380 GSeg(uint s=0,uint e=0) { argument
386 bool overlap(GSeg* d) { in overlap() argument
390 bool overlap(GSeg& d) { in overlap() argument
394 bool overlap(GSeg& d, int fuzz) { in overlap() argument
408 int overlapLen(GSeg* r) { in overlapLen() argument
430 bool contains(GSeg* s) { in contains() argument
433 bool contained(GSeg* s) { in contained() argument
437 bool equals(GSeg& d){ in equals() argument
440 bool equals(GSeg* d){ in equals() argument
[all …]
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| H A D | gff.h | 88 GMapSeg(uint s=0, uint e=0, uint gs=0, uint ge=0):GSeg(s,e), in GSeg() function
1362 GeneCDS(int i=-1, uint cstart=0, uint cend=0):GSeg(cstart, cend), idx(i) { in GSeg() function
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| /dports/biology/stringtie/stringtie-2.1.1/ |
| H A D | rlink.h | 92 …CBundlenode(int rstart=0, int rend=0, float _cov=0, int _bid=-1, CBundlenode *_nextnode=NULL):GSeg… in GSeg() function
193 …float _multi=0,float _neg_prop=0, CGroup *_next_gr=NULL): GSeg(rstart, rend), color(_color), grid(… in GSeg() function
243 int _len=0,bool f=true):GSeg(gstart,gend), geneno(_geneno),t_eq(guide),cov(_cov),strand(_strand), in GSeg() function
294 …CGene(int gstart=0, int gend=0, char _strand='.',char *gid=NULL, char *gname=NULL):GSeg(gstart,gen… in GSeg() function
331 int rstart=0, int rend=0, TAlnInfo* tif=NULL): GSeg(rstart, rend), //name(rname), in GSeg() function
439 CMaxIntv(uint start=0,uint end=0):GSeg(start,end),node(),next(NULL) {} in GSeg() function
440 …CMaxIntv(GVec<CExon>& _node,uint start,uint end,CMaxIntv *_next=NULL):GSeg(start,end),node(_node),… in GSeg() function
497 …CGraphnode(int s=0,int e=0,unsigned int id=MAX_NODE,float nodecov=0,float cap=0,float r=0):GSeg(s,… in GSeg() function
513 CJunction(int s=0,int e=0, char _strand=0):GSeg(s,e), in GSeg() function
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| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
| H A D | gtf_tracking.h | 191 GISeg(uint s=0,uint e=0, GffObj* ot=NULL):GSeg(s,e) { t=ot; } in GSeg() function
362 GXSeg(uint s=0, uint e=0, int f=0):GSeg(s,e),flags(f) { } in GSeg() function
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| /dports/biology/stringtie/stringtie-2.1.1/gclib/ |
| H A D | gff.h | 74 GMapSeg(uint s=0, uint e=0, uint gs=0, uint ge=0):GSeg(s,e), in GSeg() function
1341 GeneCDS(int i=-1, uint cstart=0, uint cend=0):GSeg(cstart, cend), idx(i) { in GSeg() function
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| /dports/biology/libgff/libgff-2.0.0/include/ |
| H A D | gff.h | 74 GMapSeg(uint s=0, uint e=0, uint gs=0, uint ge=0):GSeg(s,e), in GSeg() function
1341 GeneCDS(int i=-1, uint cstart=0, uint cend=0):GSeg(cstart, cend), idx(i) { in GSeg() function
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| /dports/biology/gffread/gffread-0.12.7/ |
| H A D | gff_utils.h | 170 CIntronData(uint istart, uint iend, char tstrand, const char* t_id=NULL):GSeg(istart, iend), in GSeg() function
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