src - OpenGrok cross reference for /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/

Name		Date	Size	#Lines	LOC
..		03-May-2022	-
cufflinks.xcodeproj/	H	06-Jul-2019	-	3,651	3,642
lemon/	H	06-Jul-2019	-	31,404	16,851
locfit/	H	03-May-2022	-	15,333	12,371
GArgs.cpp	H A D	06-Jul-2019	10.4 KiB	377	320
GArgs.h	H A D	06-Jul-2019	3.9 KiB	101	62
GBase.cpp	H A D	06-Jul-2019	19.9 KiB	853	662
GBase.h	H A D	03-May-2022	13.4 KiB	466	296
GFaSeqGet.cpp	H A D	06-Jul-2019	10 KiB	320	279
GFaSeqGet.h	H A D	06-Jul-2019	4 KiB	137	101
GFastaIndex.cpp	H A D	06-Jul-2019	5.7 KiB	182	165
GFastaIndex.h	H A D	06-Jul-2019	2 KiB	80	65
GHash.hh	H A D	03-May-2022	16.5 KiB	564	411
GList.hh	H A D	06-Jul-2019	20.5 KiB	640	494
GStr.cpp	H A D	06-Jul-2019	34.1 KiB	1,355	1,090
GStr.h	H A D	06-Jul-2019	8.9 KiB	224	178
GVec.hh	H A D	06-Jul-2019	26.2 KiB	921	715
LICENSE	H A D	06-Jul-2019	626	19	13
Makefile.am	H A D	06-Jul-2019	6 KiB	246	210
abundances.cpp	H A D	06-Jul-2019	163.2 KiB	4,965	3,509
abundances.h	H A D	06-Jul-2019	29 KiB	807	573
assemble.cpp	H A D	06-Jul-2019	15.4 KiB	569	408
assemble.h	H A D	06-Jul-2019	875	45	20
biascorrection.cpp	H A D	06-Jul-2019	22.8 KiB	836	675
biascorrection.h	H A D	06-Jul-2019	3.3 KiB	119	80
bundles.cpp	H A D	06-Jul-2019	60 KiB	2,127	1,586
bundles.h	H A D	06-Jul-2019	14.3 KiB	489	358
clustering.cpp	H A D	06-Jul-2019	3 KiB	131	108
clustering.h	H A D	06-Jul-2019	4.7 KiB	167	120
codons.cpp	H A D	06-Jul-2019	4.5 KiB	91	76
codons.h	H A D	06-Jul-2019	1 KiB	55	39
common.cpp	H A D	06-Jul-2019	12.5 KiB	489	365
common.h	H A D	06-Jul-2019	24.5 KiB	857	647
compress_gtf.cpp	H A D	06-Jul-2019	12.8 KiB	423	309
cuffcluster.cpp	H A D	06-Jul-2019	27.9 KiB	943	705
cuffcompare.cpp	H A D	06-Jul-2019	96.5 KiB	2,633	1,988
cuffdiff.cpp	H A D	03-May-2022	95.9 KiB	2,677	2,250
cuffdiff_to_gct.py	H A D	06-Jul-2019	3.2 KiB	109	86
cufflinks.cpp	H A D	06-Jul-2019	57.6 KiB	1,780	1,476
cuffmerge	H A D	03-May-2022	18.7 KiB	577	441
cuffnorm.cpp	H A D	03-May-2022	41.2 KiB	1,298	1,074
cuffquant.cpp	H A D	03-May-2022	50.9 KiB	1,607	1,233
differential.cpp	H A D	06-Jul-2019	61.8 KiB	1,621	1,180
differential.h	H A D	06-Jul-2019	39 KiB	985	783
filters.cpp	H A D	06-Jul-2019	35.9 KiB	1,156	876
filters.h	H A D	06-Jul-2019	1 KiB	43	21
gdna.cpp	H A D	06-Jul-2019	2 KiB	91	69
gdna.h	H A D	06-Jul-2019	372	16	9
genes.cpp	H A D	06-Jul-2019	3.6 KiB	156	124
genes.h	H A D	06-Jul-2019	5 KiB	218	167
gff.cpp	H A D	06-Jul-2019	71.8 KiB	2,141	1,776
gff.h	H A D	06-Jul-2019	35.1 KiB	1,102	931
gff_utils.cpp	H A D	06-Jul-2019	23.1 KiB	677	515
gff_utils.h	H A D	06-Jul-2019	20.2 KiB	611	513
gffread.cpp	H A D	06-Jul-2019	36.6 KiB	1,061	944
graph_optimize.cpp	H A D	06-Jul-2019	21.2 KiB	752	556
graph_optimize.h	H A D	06-Jul-2019	2.5 KiB	95	58
gtf_reads.cpp	H A D	06-Jul-2019	3.9 KiB	167	131
gtf_to_sam.cpp	H A D	06-Jul-2019	8.2 KiB	344	272
gtf_tracking.cpp	H A D	06-Jul-2019	26.3 KiB	779	615
gtf_tracking.h	H A D	06-Jul-2019	45.3 KiB	1,350	1,061
hits.cpp	H A D	06-Jul-2019	34.4 KiB	1,302	1,049
hits.h	H A D	06-Jul-2019	29.5 KiB	1,264	980
jensen_shannon.cpp	H A D	06-Jul-2019	4.7 KiB	172	130
jensen_shannon.h	H A D	06-Jul-2019	847	31	15
matching_merge.cpp	H A D	06-Jul-2019	2.4 KiB	104	81
matching_merge.h	H A D	06-Jul-2019	2.8 KiB	114	82
multireads.cpp	H A D	06-Jul-2019	2.8 KiB	133	108
multireads.h	H A D	06-Jul-2019	1.5 KiB	73	59
negative_binomial_distribution.h	H A D	06-Jul-2019	6.9 KiB	224	123
progressbar.h	H A D	06-Jul-2019	2.4 KiB	111	80
replicates.cpp	H A D	06-Jul-2019	38.7 KiB	1,142	883
replicates.h	H A D	06-Jul-2019	19.5 KiB	510	363
rounding.h	H A D	06-Jul-2019	6.7 KiB	192	85
sampling.cpp	H A D	06-Jul-2019	1.8 KiB	70	49
sampling.h	H A D	06-Jul-2019	8.7 KiB	308	209
scaffold_graph.cpp	H A D	06-Jul-2019	7.8 KiB	305	235
scaffold_graph.h	H A D	06-Jul-2019	1,012	40	22
scaffolds.cpp	H A D	06-Jul-2019	47.4 KiB	1,838	1,364
scaffolds.h	H A D	06-Jul-2019	19.3 KiB	709	522
tokenize.cpp	H A D	06-Jul-2019	1.2 KiB	40	27
tokenize.h	H A D	06-Jul-2019	417	19	14
tracking.cpp	H A D	06-Jul-2019	3.3 KiB	100	77
tracking.h	H A D	06-Jul-2019	3.1 KiB	119	99
transitive_closure.h	H A D	06-Jul-2019	12.9 KiB	390	292
transitive_reduction.h	H A D	06-Jul-2019	5.6 KiB	130	85
update_check.h	H A D	06-Jul-2019	2.8 KiB	114	87