1 /* config.h. Generated from config.h.in by configure. */ 2 /* config.h.in. Generated from configure.ac by autoheader. */ 3 4 /* Define if building universal (internal helper macro) */ 5 /* #undef AC_APPLE_UNIVERSAL_BUILD */ 6 7 /* Define to 1 if you have the `aligned_alloc' function. */ 8 #define HAVE_ALIGNED_ALLOC 1 9 10 /* define to 1 if the C compiler supports ALTIVEC */ 11 #define HAVE_ALTIVEC 0 12 13 /* define to 1 if the C compiler supports AVX2 */ 14 #define HAVE_AVX2 1 15 16 /* define to 1 if the C compiler supports AVX2 _mm256_extract_epi16 */ 17 #define HAVE_AVX2_MM256_EXTRACT_EPI16 1 18 19 /* define to 1 if the C compiler supports AVX2 _mm256_extract_epi32 */ 20 #define HAVE_AVX2_MM256_EXTRACT_EPI32 1 21 22 /* define to 1 if the C compiler supports AVX2 _mm256_extract_epi64 */ 23 #define HAVE_AVX2_MM256_EXTRACT_EPI64 1 24 25 /* define to 1 if the C compiler supports AVX2 _mm256_extract_epi8 */ 26 #define HAVE_AVX2_MM256_EXTRACT_EPI8 1 27 28 /* define to 1 if the C compiler supports AVX2 _mm256_insert_epi16 */ 29 #define HAVE_AVX2_MM256_INSERT_EPI16 1 30 31 /* define to 1 if the C compiler supports AVX2 _mm256_insert_epi32 */ 32 #define HAVE_AVX2_MM256_INSERT_EPI32 1 33 34 /* define to 1 if the C compiler supports AVX2 _mm256_insert_epi64 */ 35 #define HAVE_AVX2_MM256_INSERT_EPI64 1 36 37 /* define to 1 if the C compiler supports AVX2 _mm256_insert_epi8 */ 38 #define HAVE_AVX2_MM256_INSERT_EPI8 1 39 40 /* define to 1 if the C compiler supports AVX2 _mm256_set1_epi64x */ 41 #define HAVE_AVX2_MM256_SET1_EPI64X 1 42 43 /* define to 1 if the C compiler supports AVX2 _mm256_set_epi64x */ 44 #define HAVE_AVX2_MM256_SET_EPI64X 1 45 46 /* define to 1 if the C compiler supports AVX512BW */ 47 #define HAVE_AVX512BW 1 48 49 /* define to 1 if the C compiler supports AVX512F */ 50 #define HAVE_AVX512F 1 51 52 /* define to 1 if the C compiler supports AVX512VBMI */ 53 #define HAVE_AVX512VBMI 1 54 55 /* define to 1 if using clock_gettime CLOCK_MONOTONIC */ 56 #define HAVE_CLOCK_GETTIME_MONOTONIC 0 57 58 /* define to 1 if using clock_gettime CLOCK_REALTIME */ 59 #define HAVE_CLOCK_GETTIME_REALTIME 0 60 61 /* define to 1 if using clock_get_time */ 62 #define HAVE_CLOCK_GET_TIME 0 63 64 /* Define to 1 if you have the <dlfcn.h> header file. */ 65 #define HAVE_DLFCN_H 1 66 67 /* Define to 1 if you have the `filelength' function. */ 68 /* #undef HAVE_FILELENGTH */ 69 70 /* Define to 1 if you have the `getopt' function. */ 71 #define HAVE_GETOPT 1 72 73 /* define to 1 if using windows GetSystemTimeAsFileTime */ 74 #define HAVE_GETSYSTEMTIMEASFILETIME 0 75 76 /* Define to 1 if you have the <inttypes.h> header file. */ 77 #define HAVE_INTTYPES_H 1 78 79 /* Define to 1 if you have the <malloc.h> header file. */ 80 /* #undef HAVE_MALLOC_H */ 81 82 /* Define to 1 if you have the `memalign' function. */ 83 /* #undef HAVE_MEMALIGN */ 84 85 /* Define to 1 if you have the <memory.h> header file. */ 86 #define HAVE_MEMORY_H 1 87 88 /* Define to 1 if you have the `memset' function. */ 89 #define HAVE_MEMSET 1 90 91 /* define to 1 if the C compiler supports NEON */ 92 #define HAVE_NEON 0 93 94 /* Define if OpenMP is enabled */ 95 #define HAVE_OPENMP 1 96 97 /* Define to 1 if you have the `poll' function. */ 98 #define HAVE_POLL 1 99 100 /* Define to 1 if you have the <poll.h> header file. */ 101 #define HAVE_POLL_H 1 102 103 /* Define to 1 if you have the `posix_memalign' function. */ 104 #define HAVE_POSIX_MEMALIGN 1 105 106 /* Define to 1 if you have the `SetUnhandledExceptionFilter' function. */ 107 /* #undef HAVE_SETUNHANDLEDEXCEPTIONFILTER */ 108 109 /* define to 1 if the C compiler supports SSE2 */ 110 #define HAVE_SSE2 1 111 112 /* define to 1 if the C compiler supports SSE2 _mm_set1_epi64x */ 113 #define HAVE_SSE2_MM_SET1_EPI64X 1 114 115 /* define to 1 if the C compiler supports SSE2 _mm_set_epi64x */ 116 #define HAVE_SSE2_MM_SET_EPI64X 1 117 118 /* define to 1 if the C compiler supports SSE4.1 */ 119 #define HAVE_SSE41 1 120 121 /* define to 1 if the C compiler supports SSE4.1 _mm_extract_epi64 */ 122 #define HAVE_SSE41_MM_EXTRACT_EPI64 1 123 124 /* define to 1 if the C compiler supports SSE4.1 _mm_insert_epi64 */ 125 #define HAVE_SSE41_MM_INSERT_EPI64 1 126 127 /* Define to 1 if you have the <stdint.h> header file. */ 128 #define HAVE_STDINT_H 1 129 130 /* Define to 1 if you have the <stdlib.h> header file. */ 131 #define HAVE_STDLIB_H 1 132 133 /* Define to 1 if you have the <strings.h> header file. */ 134 #define HAVE_STRINGS_H 1 135 136 /* Define to 1 if you have the <string.h> header file. */ 137 #define HAVE_STRING_H 1 138 139 /* Define to 1 if the system has the type `struct __stat64'. */ 140 /* #undef HAVE_STRUCT___STAT64 */ 141 142 /* Define to 1 if you have the <sys/mman.h> header file. */ 143 #define HAVE_SYS_MMAN_H 1 144 145 /* Define to 1 if you have the <sys/stat.h> header file. */ 146 #define HAVE_SYS_STAT_H 1 147 148 /* Define to 1 if you have the <sys/types.h> header file. */ 149 #define HAVE_SYS_TYPES_H 1 150 151 /* Define to 1 if you have the <unistd.h> header file. */ 152 #define HAVE_UNISTD_H 1 153 154 /* define to 1 if the CXX compiler supports variadic macros */ 155 #define HAVE_VARIADIC_MACROS 1 156 157 /* Define to 1 if you have the <windows.h> header file. */ 158 /* #undef HAVE_WINDOWS_H */ 159 160 /* define to 1 if the C compiler supports xgetbv */ 161 #define HAVE_XGETBV 1 162 163 /* define to 1 if zlib is available */ 164 #define HAVE_ZLIB 1 165 166 /* Define to 1 if you have the `_aligned_malloc' function. */ 167 /* #undef HAVE__ALIGNED_MALLOC */ 168 169 /* Define to 1 if you have the `_fstat64' function. */ 170 /* #undef HAVE__FSTAT64 */ 171 172 /* Define to 1 if you have the `_stat64' function. */ 173 /* #undef HAVE__STAT64 */ 174 175 /* int64_t suffix is i64 */ 176 /* #undef INT64_LITERAL_SUFFIX_I64 */ 177 178 /* int64_t suffix is LL */ 179 #define INT64_LITERAL_SUFFIX_LL 1 180 181 /* int64_t suffix is unknown */ 182 /* #undef INT64_LITERAL_SUFFIX_UNKNOWN */ 183 184 /* Define to the sub-directory where libtool stores uninstalled libraries. */ 185 #define LT_OBJDIR ".libs/" 186 187 /* Name of package */ 188 #define PACKAGE "parasail" 189 190 /* Define to the address where bug reports for this package should be sent. */ 191 #define PACKAGE_BUGREPORT "jeffrey.daily@gmail.com" 192 193 /* Define to the full name of this package. */ 194 #define PACKAGE_NAME "Pairwise Sequence Alignment Library" 195 196 /* Define to the full name and version of this package. */ 197 #define PACKAGE_STRING "Pairwise Sequence Alignment Library 2.4.2" 198 199 /* Define to the one symbol short name of this package. */ 200 #define PACKAGE_TARNAME "parasail" 201 202 /* Define to the home page for this package. */ 203 #define PACKAGE_URL "" 204 205 /* Define to the version of this package. */ 206 #define PACKAGE_VERSION "2.4.2" 207 208 /* The size of `int', as computed by sizeof. */ 209 #define SIZEOF_INT 4 210 211 /* Define to 1 if you have the ANSI C header files. */ 212 #define STDC_HEADERS 1 213 214 /* Version number of package */ 215 #define VERSION "2.4.2" 216 217 /* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most 218 significant byte first (like Motorola and SPARC, unlike Intel). */ 219 #if defined AC_APPLE_UNIVERSAL_BUILD 220 # if defined __BIG_ENDIAN__ 221 # define WORDS_BIGENDIAN 1 222 # endif 223 #else 224 # ifndef WORDS_BIGENDIAN 225 /* # undef WORDS_BIGENDIAN */ 226 # endif 227 #endif 228 229 /* Enable large inode numbers on Mac OS X 10.5. */ 230 #ifndef _DARWIN_USE_64_BIT_INODE 231 # define _DARWIN_USE_64_BIT_INODE 1 232 #endif 233 234 /* Number of bits in a file offset, on hosts where this is settable. */ 235 /* #undef _FILE_OFFSET_BITS */ 236 237 /* Define for large files, on AIX-style hosts. */ 238 /* #undef _LARGE_FILES */ 239 240 /* Define for Solaris 2.5.1 so the uint32_t typedef from <sys/synch.h>, 241 <pthread.h>, or <semaphore.h> is not used. If the typedef were allowed, the 242 #define below would cause a syntax error. */ 243 /* #undef _UINT32_T */ 244 245 /* Define for Solaris 2.5.1 so the uint64_t typedef from <sys/synch.h>, 246 <pthread.h>, or <semaphore.h> is not used. If the typedef were allowed, the 247 #define below would cause a syntax error. */ 248 /* #undef _UINT64_T */ 249 250 /* Define for Solaris 2.5.1 so the uint8_t typedef from <sys/synch.h>, 251 <pthread.h>, or <semaphore.h> is not used. If the typedef were allowed, the 252 #define below would cause a syntax error. */ 253 /* #undef _UINT8_T */ 254 255 /* Define to empty if `const' does not conform to ANSI C. */ 256 /* #undef const */ 257 258 /* Define to `__inline__' or `__inline' if that's what the C compiler 259 calls it, or to nothing if 'inline' is not supported under any name. */ 260 #ifndef __cplusplus 261 /* #undef inline */ 262 #endif 263 264 /* Define to the type of a signed integer type of width exactly 16 bits if 265 such a type exists and the standard includes do not define it. */ 266 /* #undef int16_t */ 267 268 /* Define to the type of a signed integer type of width exactly 32 bits if 269 such a type exists and the standard includes do not define it. */ 270 /* #undef int32_t */ 271 272 /* Define to the type of a signed integer type of width exactly 64 bits if 273 such a type exists and the standard includes do not define it. */ 274 /* #undef int64_t */ 275 276 /* Define to the type of a signed integer type of width exactly 8 bits if such 277 a type exists and the standard includes do not define it. */ 278 /* #undef int8_t */ 279 280 /* Define to `long int' if <sys/types.h> does not define. */ 281 /* #undef off_t */ 282 283 /* Define to the equivalent of the C99 'restrict' keyword, or to 284 nothing if this is not supported. Do not define if restrict is 285 supported directly. */ 286 #define restrict __restrict 287 /* Work around a bug in Sun C++: it does not support _Restrict or 288 __restrict__, even though the corresponding Sun C compiler ends up with 289 "#define restrict _Restrict" or "#define restrict __restrict__" in the 290 previous line. Perhaps some future version of Sun C++ will work with 291 restrict; if so, hopefully it defines __RESTRICT like Sun C does. */ 292 #if defined __SUNPRO_CC && !defined __RESTRICT 293 # define _Restrict 294 # define __restrict__ 295 #endif 296 297 /* Define to `unsigned int' if <sys/types.h> does not define. */ 298 /* #undef size_t */ 299 300 /* Define to the type of an unsigned integer type of width exactly 16 bits if 301 such a type exists and the standard includes do not define it. */ 302 /* #undef uint16_t */ 303 304 /* Define to the type of an unsigned integer type of width exactly 32 bits if 305 such a type exists and the standard includes do not define it. */ 306 /* #undef uint32_t */ 307 308 /* Define to the type of an unsigned integer type of width exactly 64 bits if 309 such a type exists and the standard includes do not define it. */ 310 /* #undef uint64_t */ 311 312 /* Define to the type of an unsigned integer type of width exactly 8 bits if 313 such a type exists and the standard includes do not define it. */ 314 /* #undef uint8_t */ 315