1# 2# Makefile.am 3# 4# 5# Part of TREE-PUZZLE 5.2 (July 2004) 6# 7# (c) 2003-2004 by Heiko A. Schmidt, Korbinian Strimmer, and Arndt von Haeseler 8# (c) 1999-2003 by Heiko A. Schmidt, Korbinian Strimmer, 9# M. Vingron, and Arndt von Haeseler 10# (c) 1995-1999 by Korbinian Strimmer and Arndt von Haeseler 11# 12# All parts of the source except where indicated are distributed under 13# the GNU public licence. See http://www.opensource.org for details. 14# 15# ($Id$) 16# 17 18SUBDIRS = sprng 19bin_PROGRAMS = puzzle @PPUZZLE@ 20EXTRA_PROGRAMS = ppuzzle 21EXTRA_DIST = \ 22 pstep-deglob.c\ 23 pstep-deglob.h\ 24 pstep-mrca.c\ 25 pstep-mrca.h\ 26 pstep-orig.c\ 27 pstep-orig.h\ 28 pstep-recursive.c\ 29 pstep-recursive.h\ 30 split.c \ 31 recur.c \ 32 recur-old.c \ 33 mrca.c \ 34 pstep-split.c\ 35 pstep-split.h\ 36 subsetmatr.c\ 37 subsetmatr.h\ 38 pstep-trueID.c\ 39 pstep-trueID.h 40 41SPRNG_OBJ = makeseed.$(OBJEXT) store.$(OBJEXT) memory.$(OBJEXT) checkid.$(OBJEXT) lcg64.$(OBJEXT) primes-lcg64.$(OBJEXT) 42SPRNG_DIR_OBJ = sprng/makeseed.$(OBJEXT) sprng/store.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/lcg64.$(OBJEXT) sprng/primes-lcg64.$(OBJEXT) 43#SPRNG_OBJ = sprng/makeseed.$(OBJEXT) sprng/store.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/lcg64.$(OBJEXT) sprng/primes-lcg64.$(OBJEXT) 44 45#SPRNG_LFG_SRCS = sprng/lfg.c sprng/interface.h sprng/makeseed.c sprng/memory.c sprng/checkid.c sprng/store.c 46#SPRNG_LFG_OBJS = sprng/lfg.$(OBJEXT) sprng/makeseed.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/store.$(OBJEXT) 47#SPRNG_MLFG_SRCS = sprng/mlfg.c sprng/interface.h sprng/makeseed.c sprng/memory.c sprng/checkid.c sprng/store.c sprng/int64.h 48#SPRNG_MLFG_OBJS = sprng/mlfg.$(OBJEXT) sprng/makeseed.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/store.$(OBJEXT) 49#SPRNG_LCG_SRCS = sprng/lcg.c sprng/interface.h sprng/primes-lcg.c sprng/makeseed.c sprng/memory.c sprng/checkid.c sprng/store.c 50#SPRNG_LCG_OBJS = sprng/lcg.$(OBJEXT) sprng/primes-lcg.$(OBJEXT) sprng/makeseed.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/store.$(OBJEXT) 51#SPRNG_CMRG_SRCS = sprng/lcg64.c sprng/interface.h sprng/primes-lcg64.c sprng/makeseed.c sprng/memory.c sprng/checkid.c sprng/store.c 52#SPRNG_CMRG_OBJS = sprng/lcg64.$(OBJEXT) sprng/primes-lcg64.$(OBJEXT) sprng/makeseed.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/store.$(OBJEXT) 53#SPRNG_LCG64_SRCS = sprng/lcg64.c sprng/interface.h sprng/primes-lcg64.c sprng/makeseed.c sprng/memory.c sprng/checkid.c sprng/store.c 54#SPRNG_LCG64_OBJS = sprng/lcg64.$(OBJEXT) sprng/primes-lcg64.$(OBJEXT) sprng/makeseed.$(OBJEXT) sprng/memory.$(OBJEXT) sprng/checkid.$(OBJEXT) sprng/store.$(OBJEXT) 55 56 57puzzle_SOURCES = gamma.c ml1.c ml2.c mlparam.c model1.c model2.c puzzle1.c puzzle2.c pstep.c util.c consensus.c treesort.c treetest.c ml.h util.h puzzle.h pstep.h gamma.h consensus.h treesort.h treetest.h 58#puzzle_LDADD = sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o sprng/liblcg64.a 59puzzle_LDADD = sgamma.$(OBJEXT) sml1.$(OBJEXT) sml2.$(OBJEXT) smlparam.$(OBJEXT) smodel1.$(OBJEXT) smodel2.$(OBJEXT) spuzzle1.$(OBJEXT) spuzzle2.$(OBJEXT) spstep.$(OBJEXT) sutil.$(OBJEXT) sconsensus.$(OBJEXT) streesort.$(OBJEXT) streetest.$(OBJEXT) 60 61INCLUDES = -I. -I.. -I$(srcdir) -I$(srcdir)/sprng 62SDEFS = 63SCFLAGS = 64SLDFLAGS = 65SLDLIBS = @LIBS@ 66 67SCOMPILE = $(CC) $(SDEFS) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(SCFLAGS) $(CFLAGS) 68SCCLD = $(CC) 69SLINK = $(SCCLD) $(AM_CFLAGS) $(CFLAGS) $(SLDFLAGS) $(LDFLAGS) 70 71ppuzzle_SOURCES = gamma.c ml1.c ml2.c mlparam.c model1.c model2.c puzzle1.c puzzle2.c pstep.c sched.c util.c consensus.c treesort.c treetest.c ppuzzle.c ml.h util.h puzzle.h pstep.h gamma.h ppuzzle.h sched.h consensus.h treesort.h treetest.h 72ppuzzle_LDADD = pgamma.$(OBJEXT) pml1.$(OBJEXT) pml2.$(OBJEXT) pmlparam.$(OBJEXT) pmodel1.$(OBJEXT) pmodel2.$(OBJEXT) ppuzzle1.$(OBJEXT) ppuzzle2.$(OBJEXT) ppstep.$(OBJEXT) psched.$(OBJEXT) putil.$(OBJEXT) pconsensus.$(OBJEXT) ptreesort.$(OBJEXT) ptreetest.$(OBJEXT) ppuzzle.$(OBJEXT) 73 74PCC = @MPICC@ 75PDEFS = -DPARALLEL 76PCFLAGS = 77PLDFLAGS = 78PLDLIBS = @LIBS@ @MPILIBS@ 79 80PCOMPILE = $(PCC) $(PDEFS) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(PCFLAGS) $(CFLAGS) 81PCCLD = $(PCC) 82PLINK = $(PCCLD) $(AM_CFLAGS) $(PCFLAGS) $(CFLAGS) $(PLDFLAGS) $(LDFLAGS) 83 84 85make-sprng-objs: 86 cd sprng && $(MAKE) $(SPRNG_OBJ) 87 88 89puzzle$(EXEEXT): $(puzzle_LDADD) $(puzzle_SOURCES) make-sprng-objs Makefile 90 $(SLINK) $(puzzle_LDADD) $(SPRNG_DIR_OBJ) $(SLDLIBS) -o $@ 91 92sml1.$(OBJEXT): ml1.c ml.h util.h Makefile 93 $(SCOMPILE) -c $(srcdir)/ml1.c && mv ml1.$(OBJEXT) $@ 94sml2.$(OBJEXT): ml2.c ml.h util.h Makefile 95 $(SCOMPILE) -c $(srcdir)/ml2.c && mv ml2.$(OBJEXT) $@ 96smlparam.$(OBJEXT): mlparam.c ml.h util.h gamma.h Makefile 97 $(SCOMPILE) -c $(srcdir)/mlparam.c && mv mlparam.$(OBJEXT) $@ 98smodel1.$(OBJEXT): model1.c ml.h util.h Makefile 99 $(SCOMPILE) -c $(srcdir)/model1.c && mv model1.$(OBJEXT) $@ 100smodel2.$(OBJEXT): model2.c ml.h util.h Makefile 101 $(SCOMPILE) -c $(srcdir)/model2.c && mv model2.$(OBJEXT) $@ 102spuzzle1.$(OBJEXT): puzzle1.c ml.h util.h puzzle.h gamma.h ppuzzle.h Makefile 103 $(SCOMPILE) -c $(srcdir)/puzzle1.c && mv puzzle1.$(OBJEXT) $@ 104spuzzle2.$(OBJEXT): puzzle2.c ml.h util.h puzzle.h ppuzzle.h Makefile 105 $(SCOMPILE) -c $(srcdir)/puzzle2.c && mv puzzle2.$(OBJEXT) $@ 106spstep.$(OBJEXT): pstep.c ml.h util.h puzzle.h ppuzzle.h Makefile 107 $(SCOMPILE) -c $(srcdir)/pstep.c && mv pstep.$(OBJEXT) $@ 108sutil.$(OBJEXT): util.c util.h Makefile 109 $(SCOMPILE) -c $(srcdir)/util.c && mv util.$(OBJEXT) $@ 110sgamma.$(OBJEXT): gamma.c gamma.h util.h Makefile 111 $(SCOMPILE) -c $(srcdir)/gamma.c && mv gamma.$(OBJEXT) $@ 112sconsensus.$(OBJEXT): consensus.c consensus.h util.h Makefile 113 $(SCOMPILE) -c $(srcdir)/consensus.c && mv consensus.$(OBJEXT) $@ 114streesort.$(OBJEXT): treesort.c treesort.h util.h Makefile 115 $(SCOMPILE) -c $(srcdir)/treesort.c && mv treesort.$(OBJEXT) $@ 116streetest.$(OBJEXT): treetest.c treetest.h util.h Makefile 117 $(SCOMPILE) -c $(srcdir)/treetest.c && mv treetest.$(OBJEXT) $@ 118 119# 120#SPRNG 121# 122 123 124## sprng/makeseed.$(OBJEXT) : sprng/makeseed.c 125## $(CC) -c $(CFLAGS) sprng/makeseed.c 126## 127## sprng/store.$(OBJEXT) : sprng/store.c sprng/store.h 128## $(CC) -c $(CFLAGS) sprng/store.c 129## 130## sprng/memory.$(OBJEXT) : sprng/memory.c 131## $(CC) -c $(CFLAGS) sprng/memory.c 132## 133## sprng/checkid.$(OBJEXT) : sprng/checkid.c sprng/memory.h 134## $(CC) -c $(CFLAGS) sprng/checkid.c 135## 136## sprng/lcg64.$(OBJEXT) : sprng/interface.h sprng/lcg64.c sprng/memory.h sprng/primes.h sprng/multiply.h sprng/store.h 137## $(CC) -c $(CFLAGS) $(FFXN) $(INLINEOPT) lcg64.c 138## 139## sprng/primes-lcg64.$(OBJEXT) : sprng/primes-lcg64.h sprng/primes-lcg64.c sprng/primelist-lcg64.h 140## $(CC) -c $(CFLAGS) primes-lcg64.c 141## 142## #sprng/lcg64.a: 143## # $(CD) sprng; $(make) 144## 145## #sprng.h: 146## # $(CP) $(srcdir)/sprng-1.0/include/sprng.h $@ 147## #interface.h: 148## # $(CP) $(srcdir)/sprng-1.0/include/interface.h $@ 149## #slcg64.o : interface.h lcg64.c memory.h primes.h multiply.h store.h 150## # $(SCOMPILE) -c $(srcdir)/lcg64.c && mv lcg64.o $@ 151## #plcg64.o : interface.h lcg64.c memory.h primes.h multiply.h store.h 152## # $(SCOMPILE) -c $(srcdir)/lcg64.c && mv lcg64.o $@ 153## # 154## #primes.o : primes.h primes.c 155## # $(CC) -c $(CFLAGS) primes.c -I$(SRCDIR) 156 157 158 159ppuzzle$(EXEEXT): $(ppuzzle_LDADD) $(ppuzzle_SOURCES) make-sprng-objs Makefile 160 $(PLINK) $(ppuzzle_LDADD) $(SPRNG_DIR_OBJ) $(PLDLIBS) -o $@ 161 162pml1.$(OBJEXT): ml1.c ml.h util.h Makefile 163 $(PCOMPILE) -c $(srcdir)/ml1.c && mv ml1.$(OBJEXT) $@ 164pml2.$(OBJEXT): ml2.c ml.h util.h Makefile 165 $(PCOMPILE) -c $(srcdir)/ml2.c && mv ml2.$(OBJEXT) $@ 166pmlparam.$(OBJEXT): mlparam.c ml.h util.h gamma.h Makefile 167 $(PCOMPILE) -c $(srcdir)/mlparam.c && mv mlparam.$(OBJEXT) $@ 168pmodel1.$(OBJEXT): model1.c ml.h util.h Makefile 169 $(PCOMPILE) -c $(srcdir)/model1.c && mv model1.$(OBJEXT) $@ 170pmodel2.$(OBJEXT): model2.c ml.h util.h Makefile 171 $(PCOMPILE) -c $(srcdir)/model2.c && mv model2.$(OBJEXT) $@ 172ppuzzle1.$(OBJEXT): puzzle1.c ml.h util.h puzzle.h gamma.h ppuzzle.h Makefile 173 $(PCOMPILE) -c $(srcdir)/puzzle1.c && mv puzzle1.$(OBJEXT) $@ 174ppuzzle2.$(OBJEXT): puzzle2.c ml.h util.h puzzle.h ppuzzle.h Makefile 175 $(PCOMPILE) -c $(srcdir)/puzzle2.c && mv puzzle2.$(OBJEXT) $@ 176ppstep.$(OBJEXT): pstep.c ml.h util.h puzzle.h ppuzzle.h Makefile 177 $(PCOMPILE) -c $(srcdir)/pstep.c && mv pstep.$(OBJEXT) $@ 178putil.$(OBJEXT): util.c util.h Makefile 179 $(PCOMPILE) -c $(srcdir)/util.c && mv util.$(OBJEXT) $@ 180pgamma.$(OBJEXT): gamma.c gamma.h util.h Makefile 181 $(PCOMPILE) -c $(srcdir)/gamma.c && mv gamma.$(OBJEXT) $@ 182pconsensus.$(OBJEXT): consensus.c consensus.h util.h Makefile 183 $(PCOMPILE) -c $(srcdir)/consensus.c && mv consensus.$(OBJEXT) $@ 184ptreesort.$(OBJEXT): treesort.c treesort.h util.h Makefile 185 $(PCOMPILE) -c $(srcdir)/treesort.c && mv treesort.$(OBJEXT) $@ 186ptreetest.$(OBJEXT): treetest.c treetest.h util.h Makefile 187 $(PCOMPILE) -c $(srcdir)/treetest.c && mv treetest.$(OBJEXT) $@ 188psched.$(OBJEXT): sched.c sched.h ppuzzle.h Makefile 189 $(PCOMPILE) -c $(srcdir)/sched.c && mv sched.$(OBJEXT) $@ 190ppuzzle.$(OBJEXT): ppuzzle.c ppuzzle.h ml.h util.h puzzle.h gamma.h sched.h Makefile 191 $(PCOMPILE) -c $(srcdir)/ppuzzle.c 192 193