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Searched defs:TPattern (Results 1 – 25 of 40) sorted by relevance

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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/
H A Dtest_find_backtracking.h56 testFinder(FinderTester<TText, TPattern, TSpec> & tester, Finder_<TText, TPattern, TFinderSpec> con… in testFinder() argument
79 testFinder(FinderTester<TText, Index<TPattern, TPatternIndexSpec>, TSpec> & tester, in testFinder()
114 typedef StringSet<CharString> TPattern; typedef
130 typedef StringSet<CharString> TPattern; in SEQAN_DEFINE_TEST() typedef
177 typedef StringSet<CharString> TPattern; in SEQAN_DEFINE_TEST() typedef
221 typedef CharString TPattern; in SEQAN_DEFINE_TEST() typedef
255 typedef CharString TPattern; in SEQAN_DEFINE_TEST() typedef
H A Dtest_find_base.h120 addSolution(FinderTester<TText, TPattern, TSpec> & tester, TTextOcc textOcc, TPatternOcc patternOcc… in addSolution() argument
134 addResult(FinderTester<TText, TPattern, TSpec> & tester, TTextOcc textOcc, TPatternOcc patternOcc, … in addResult() argument
148 test(FinderTester<TText, TPattern, TSpec> & tester) in test() argument
/dports/biology/seqan1/seqan-1.3.1/demos/howto/
H A Dfilter_similar_sequences.cpp21 typedef Pattern<TIndex, Swift<SwiftSemiGlobal> > TPattern; in main() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/howto/
H A Dfilter_similar_sequences.cpp25 typedef Pattern<TIndex, Swift<SwiftSemiGlobal> > TPattern; in main() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/journaled_string_tree/
H A Djournaled_string_tree_base.cpp34 typedef Pattern<DnaString, Horspool> TPattern; in main() typedef
H A Djournaled_string_tree_base_assignment1.cpp29 typedef Pattern<DnaString, MyersUkkonen> TPattern; in main() typedef
/dports/biology/seqan1/seqan-1.3.1/seqan/find/
H A Dfind_horspool.h145 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
310 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
H A Dfind_wumanber.h128 typedef Pattern<TNeedle, WuManber> TPattern; typedef
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/find/
H A Dfind_horspool.h139 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
304 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
H A Dfind_wumanber.h129 typedef Pattern<TNeedle, WuManber> TPattern; typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/find/
H A Dfind_horspool.h139 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
304 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
H A Dfind_wumanber.h129 typedef Pattern<TNeedle, WuManber> TPattern; typedef
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/
H A Dfind_horspool.h147 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
313 typedef Pattern<TNeedle2, Horspool> TPattern; in _findHorspool() typedef
H A Dfind_wumanber.h127 typedef Pattern<TNeedle, WuManber> TPattern; typedef
/dports/biology/seqan1/seqan-1.3.1/demos/tutorial/read_mapping/
H A Dminimapper.cpp48 typedef Pattern<TIndex, Swift<SwiftSemiGlobal> > TPattern; typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/unassigned_or_unused/
H A Dminimapper.cpp50 typedef Pattern<TIndex, Swift<SwiftSemiGlobal> > TPattern; typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/find/
H A Dtest_find.cpp1692 typedef Pattern<CharString, TPatternSpec> TPattern; in test_pattern_copycon() typedef
1701 typedef Pattern<CharString, TPatternSpec> TPattern; in test_pattern_assign() typedef
1712 typedef Pattern<CharString, TPatternSpec> TPattern; in test_pattern_movecon() typedef
1721 typedef Pattern<CharString, TPatternSpec> TPattern; in test_pattern_moveassign() typedef
1733 typedef Pattern<DnaString, TPatternSpec> TPattern; in test_pattern_set_host() typedef
/dports/biology/seqan1/seqan-1.3.1/apps/rabema/
H A Dfind_approx_dp_quality.h150 typedef Pattern<TNeedle, QualityDpSearch<FindInfix, HasFindBeginSupport> > TPattern; in _patternInit() typedef
269 typedef Pattern<TNeedle, QualityDpSearch<TSpec, true> > TPattern; in findBegin() typedef
/dports/graphics/povray36/povray-3.6.1/source/
H A Dimage.cpp400 DBL image_pattern(VECTOR EPoint, TPATTERN *TPattern) in image_pattern()
1045 static int map(VECTOR EPoint, TPATTERN *TPattern, DBL *xcoor, DBL *ycoor) in map()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/
H A Dncbidiag_p.hpp175 typedef vector< pair<TCode, TCode> > TPattern; typedef in CDiagStrErrCodeMatcher
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/
H A Dncbidiag_p.hpp175 typedef vector< pair<TCode, TCode> > TPattern; typedef in CDiagStrErrCodeMatcher
/dports/graphics/povray37/povray-3.7.0.10/source/backend/support/
H A Dimageutil.cpp374 DBL image_pattern(const VECTOR EPoint, const TPATTERN *TPattern) in image_pattern()
896 static int map_pos(const VECTOR EPoint, const TPATTERN *TPattern, DBL *xcoor, DBL *ycoor) in map_pos()
/dports/audio/epos-devel/epos-2.5.37/src/nnet/
H A Dtraindata.cc15 REGVECTOR (TPattern, TPatterns) in REGVECTOR() argument
/dports/graphics/megapov/megapov-1.2.1/source/
H A Dimage.cpp415 DBL image_pattern(VECTOR EPoint, TPATTERN *TPattern) in image_pattern()
1132 static int map(VECTOR EPoint, TPATTERN *TPattern, DBL *xcoor, DBL *ycoor) in map()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/serial/datatool/
H A Dtraversal_spec_file_parser.hpp49 typedef std::vector<std::string> TPattern; typedef in CTraversalSpecFileParser

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