seqan-seqan-v2.4.0/demos/unassigned_or_unused

arg_align -- Simple Alignment Tool
==================================

This simple tool takes two DNA5 strings from the command line and
performs local and global alignment on them.  The used scoring scheme
is edit distance scoring.

Example:

  $ arg_align AAACCCCCCCCCCAAA AAAAAA
  ********************************
   arg_align  -- Simple Alignment
  ********************************

  We use edit distance scoring

  Local alignment with score 0
        0     .    :    .
          AAACCCCCCCCCCAAA
          |||
          AAAAAA----------

  Global alignment with score -10
        0     .    :    .
          AAACCCCCCCCCCAAA
          |||          |||
          AAA----------AAA
Name		Date	Size	#Lines	LOC
..		03-May-2022	-
tutorial_file_io/	H	02-Feb-2018	-	196	139
tutorial_sequence/	H	03-May-2022	-	235	149
tutorials_custim_io/	H	03-May-2022	-	1,670	1,453
alphabet.cpp	H A D	02-Feb-2018	616	26	15
annotation_converter.cpp	H A D	02-Feb-2018	2.4 KiB	69	54
arg_align.README	H A D	02-Feb-2018	704	28	21
arg_align.cpp	H A D	02-Feb-2018	3.2 KiB	105	50
bam_library_size.cpp	H A D	02-Feb-2018	8.3 KiB	269	170
bam_print_alignments.cpp	H A D	02-Feb-2018	4.6 KiB	133	70
bamutil.cpp	H A D	02-Feb-2018	10.2 KiB	300	202
benchmark_stream.cpp	H A D	02-Feb-2018	14.1 KiB	423	248
benchmark_stream_write.cpp	H A D	02-Feb-2018	9.3 KiB	255	162
ecoln.out	H A D	02-Feb-2018	15.7 KiB	553	358
file_format.cpp	H A D	02-Feb-2018	1.2 KiB	37	26
file_readwrite.cpp	H A D	02-Feb-2018	854	37	28
file_speed.cpp	H A D	02-Feb-2018	2.9 KiB	105	82
filter_sam.cpp	H A D	02-Feb-2018	6.4 KiB	185	140
find_wild.cpp	H A D	02-Feb-2018	728	23	16
gff2gtf.cpp	H A D	02-Feb-2018	806	37	29
graph_hmm_silent.cpp	H A D	02-Feb-2018	4 KiB	118	89
index_find.cpp	H A D	02-Feb-2018	1.2 KiB	34	20
index_find_stringset.cpp	H A D	02-Feb-2018	823	29	18
index_lcp.cpp	H A D	02-Feb-2018	1.3 KiB	35	21
index_mums.cpp	H A D	02-Feb-2018	1.6 KiB	48	26
index_node_predicate.cpp	H A D	02-Feb-2018	2.6 KiB	94	59
index_qgram_counts.cpp	H A D	02-Feb-2018	1.5 KiB	42	26
index_sufarray.cpp	H A D	02-Feb-2018	682	28	17
index_supermaxrepeats.cpp	H A D	02-Feb-2018	1.4 KiB	40	19
iterator.cpp	H A D	02-Feb-2018	1.5 KiB	46	31
lagan1.fasta	H A D	02-Feb-2018	99.1 KiB	1,430	1,430
lagan2.fasta	H A D	02-Feb-2018	107.2 KiB	1,801	1,800
minimapper.cpp	H A D	02-Feb-2018	4.3 KiB	119	55
modifier_modreverse.cpp	H A D	02-Feb-2018	558	22	15
modifier_modview.cpp	H A D	02-Feb-2018	844	36	24
modifier_nested.cpp	H A D	02-Feb-2018	767	25	18
parse_lm_stellar.cpp	H A D	02-Feb-2018	4.2 KiB	108	60
rooted_iterator.cpp	H A D	02-Feb-2018	868	23	15
sam2svg.cpp	H A D	02-Feb-2018	8.2 KiB	223	157
sample_seqs.cpp	H A D	02-Feb-2018	3.9 KiB	108	54
seeds.cpp	H A D	02-Feb-2018	1.5 KiB	41	29
segmentalignment.cpp	H A D	02-Feb-2018	1.9 KiB	76	60
sequence_1.fa	H A D	02-Feb-2018	4 KiB	52	51
sequence_2.fa	H A D	02-Feb-2018	4 KiB	52	51
sequence_length.cpp	H A D	02-Feb-2018	805	36	24
soft_to_hard_masking.cpp	H A D	02-Feb-2018	3.2 KiB	87	36