Searched defs:allele_counts (Results 1 – 5 of 5) sorted by relevance
15 def hwe_expectation(genotype, allele_counts): argument
50 vector<int> allele_counts; in output_frequency() local199 vector<int> allele_counts; in output_het() local324 vector<int> allele_counts; in output_hwe() local529 vector<int> allele_counts; in output_indv_freq_burden() local2740 vector<int> allele_counts; in output_singletons() local3167 vector<int> allele_counts; in output_TsTv_by_count() local3896 vector<int> allele_counts; in output_per_site_nucleotide_diversity() local3977 vector<int> allele_counts; in output_Tajima_D() local4104 vector<int> allele_counts; in output_windowed_nucleotide_diversity() local4602 vector<int> allele_counts; in output_indv_relatedness_Manichaikul() local[all …]
795 vector<int> allele_counts; in filter_sites_by_frequency_and_call_rate() local896 vector<int> allele_counts; in filter_sites_by_allele_count() local
398 vector<int> allele_counts(get_N_alleles(), 0); in get_allele_counts() local
367 Counts<Nt2> allele_counts = tally_allele_counts(sample_calls()); in filter_mac() local